Gene : VAP27-2 A. thaliana TAIR10
Primary Identifier:  ? AT1G08820 Defline:  (1 of 1) PTHR10809//PTHR10809:SF59 - VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN // VESICLE-ASSOCIATED PROTEIN 2-2
Genomic Order:  831 Name:  ? AT1G08820
Secondary Identifier:  ? PAC:19649523
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08820 0.5kb upstream 0.5kb upstream 4224 true Chr1: 2821552-2825775 Arabidopsis thaliana
AT1G08820 0.5kb upstream 0.5kb upstream 500 false Chr1: 2825276-2825775 Arabidopsis thaliana
AT1G08820 0.5kb downstream 0.5kb downstream 4224 true Chr1: 2821052-2825275 Arabidopsis thaliana
AT1G08820 0.5kb downstream 0.5kb downstream 500 false Chr1: 2821052-2821551 Arabidopsis thaliana
AT1G08820 1.0kb upstream 1.0kb upstream 4724 true Chr1: 2821552-2826275 Arabidopsis thaliana
AT1G08820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2825276-2826275 Arabidopsis thaliana
AT1G08820 1.0kb downstream 1.0kb downstream 4724 true Chr1: 2820552-2825275 Arabidopsis thaliana
AT1G08820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2820552-2821551 Arabidopsis thaliana
AT1G08820 2.0kb upstream 2.0kb upstream 5724 true Chr1: 2821552-2827275 Arabidopsis thaliana
AT1G08820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2825276-2827275 Arabidopsis thaliana
AT1G08820 2.0kb downstream 2.0kb downstream 5724 true Chr1: 2819552-2825275 Arabidopsis thaliana
AT1G08820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2819552-2821551 Arabidopsis thaliana
AT1G08820 5.0kb upstream 5.0kb upstream 8724 true Chr1: 2821552-2830275 Arabidopsis thaliana
AT1G08820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2825276-2830275 Arabidopsis thaliana
AT1G08820 5.0kb downstream 5.0kb downstream 8724 true Chr1: 2816552-2825275 Arabidopsis thaliana
AT1G08820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2816552-2821551 Arabidopsis thaliana
AT1G08820 10.0kb upstream 10.0kb upstream 13724 true Chr1: 2821552-2835275 Arabidopsis thaliana
AT1G08820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2825276-2835275 Arabidopsis thaliana
AT1G08820 10.0kb downstream 10.0kb downstream 13724 true Chr1: 2811552-2825275 Arabidopsis thaliana
AT1G08820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2811552-2821551 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380438 5261 Brassicaceae View MSA
123829171 5264 Brassicales-Malvales View MSA
124345755 5266 SBM View MSA
124251569 5268 Malvidae View MSA
124070661 5270 Rosid View MSA
123750934 5271 Pentapetalae View MSA
122796486 5272 Eudicot View MSA
122049501 5273 Angiosperm View MSA
121311441 5274 Embryophyte View MSA
123348736 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.299        
cufflinks 10.383        
cufflinks 5.306       Low
cufflinks 11.269       High
cufflinks 6.411        
cufflinks 9.797        

0 Strain