Gene : CSD1 A. thaliana TAIR10
Primary Identifier:  ? AT1G08830 Defline:  (1 of 3) K04565 - superoxide dismutase, Cu-Zn family (SOD1)
Genomic Order:  832 Name:  ? AT1G08830
Secondary Identifier:  ? PAC:19652861
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana DETOX1-PWY Arabidopsis thaliana pathologic  
Athaliana DETOX1-PWY-1 Arabidopsis thaliana pathologic  
Athaliana PWY-6854 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08830 0.5kb upstream 0.5kb upstream 2755 true Chr1: 2826561-2829315 Arabidopsis thaliana
AT1G08830 0.5kb upstream 0.5kb upstream 500 false Chr1: 2826561-2827060 Arabidopsis thaliana
AT1G08830 0.5kb downstream 0.5kb downstream 2755 true Chr1: 2827061-2829815 Arabidopsis thaliana
AT1G08830 0.5kb downstream 0.5kb downstream 500 false Chr1: 2829316-2829815 Arabidopsis thaliana
AT1G08830 1.0kb upstream 1.0kb upstream 3255 true Chr1: 2826061-2829315 Arabidopsis thaliana
AT1G08830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2826061-2827060 Arabidopsis thaliana
AT1G08830 1.0kb downstream 1.0kb downstream 3255 true Chr1: 2827061-2830315 Arabidopsis thaliana
AT1G08830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2829316-2830315 Arabidopsis thaliana
AT1G08830 2.0kb upstream 2.0kb upstream 4255 true Chr1: 2825061-2829315 Arabidopsis thaliana
AT1G08830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2825061-2827060 Arabidopsis thaliana
AT1G08830 2.0kb downstream 2.0kb downstream 4255 true Chr1: 2827061-2831315 Arabidopsis thaliana
AT1G08830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2829316-2831315 Arabidopsis thaliana
AT1G08830 5.0kb upstream 5.0kb upstream 7255 true Chr1: 2822061-2829315 Arabidopsis thaliana
AT1G08830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2822061-2827060 Arabidopsis thaliana
AT1G08830 5.0kb downstream 5.0kb downstream 7255 true Chr1: 2827061-2834315 Arabidopsis thaliana
AT1G08830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2829316-2834315 Arabidopsis thaliana
AT1G08830 10.0kb upstream 10.0kb upstream 12255 true Chr1: 2817061-2829315 Arabidopsis thaliana
AT1G08830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2817061-2827060 Arabidopsis thaliana
AT1G08830 10.0kb downstream 10.0kb downstream 12255 true Chr1: 2827061-2839315 Arabidopsis thaliana
AT1G08830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2829316-2839315 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371325 5261 Brassicaceae View MSA
123835186 5264 Brassicales-Malvales View MSA
124350361 5266 SBM View MSA
124238216 5268 Malvidae View MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.073     High  
cufflinks 38.54     High Low
cufflinks 53.971     High  
cufflinks 65.602     High  
cufflinks 56.716     High  
cufflinks 63.024     High  

0 Strain