Gene : CJD1 A. thaliana TAIR10
Primary Identifier:  ? AT1G08640 Defline:  (1 of 1) PTHR33372//PTHR33372:SF1 - FAMILY NOT NAMED // CHLOROPLAST J-LIKE DOMAIN 1-CONTAINING PROTEIN
Genomic Order:  814 Name:  ? AT1G08640
Secondary Identifier:  ? PAC:19657996
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08640 0.5kb upstream 0.5kb upstream 3381 true Chr1: 2748398-2751778 Arabidopsis thaliana
AT1G08640 0.5kb upstream 0.5kb upstream 500 false Chr1: 2751279-2751778 Arabidopsis thaliana
AT1G08640 0.5kb downstream 0.5kb downstream 3381 true Chr1: 2747898-2751278 Arabidopsis thaliana
AT1G08640 0.5kb downstream 0.5kb downstream 500 false Chr1: 2747898-2748397 Arabidopsis thaliana
AT1G08640 1.0kb upstream 1.0kb upstream 3881 true Chr1: 2748398-2752278 Arabidopsis thaliana
AT1G08640 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2751279-2752278 Arabidopsis thaliana
AT1G08640 1.0kb downstream 1.0kb downstream 3881 true Chr1: 2747398-2751278 Arabidopsis thaliana
AT1G08640 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2747398-2748397 Arabidopsis thaliana
AT1G08640 2.0kb upstream 2.0kb upstream 4881 true Chr1: 2748398-2753278 Arabidopsis thaliana
AT1G08640 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2751279-2753278 Arabidopsis thaliana
AT1G08640 2.0kb downstream 2.0kb downstream 4881 true Chr1: 2746398-2751278 Arabidopsis thaliana
AT1G08640 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2746398-2748397 Arabidopsis thaliana
AT1G08640 5.0kb upstream 5.0kb upstream 7881 true Chr1: 2748398-2756278 Arabidopsis thaliana
AT1G08640 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2751279-2756278 Arabidopsis thaliana
AT1G08640 5.0kb downstream 5.0kb downstream 7881 true Chr1: 2743398-2751278 Arabidopsis thaliana
AT1G08640 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2743398-2748397 Arabidopsis thaliana
AT1G08640 10.0kb upstream 10.0kb upstream 12881 true Chr1: 2748398-2761278 Arabidopsis thaliana
AT1G08640 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2751279-2761278 Arabidopsis thaliana
AT1G08640 10.0kb downstream 10.0kb downstream 12881 true Chr1: 2738398-2751278 Arabidopsis thaliana
AT1G08640 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2738398-2748397 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364278 5261 Brassicaceae View MSA
123831162 5264 Brassicales-Malvales View MSA
124345315 5266 SBM View MSA
124244811 5268 Malvidae View MSA
124063539 5270 Rosid View MSA
123738014 5271 Pentapetalae View MSA
122791822 5272 Eudicot View MSA
122045556 5273 Angiosperm View MSA
121344488 5274 Embryophyte View MSA
123428806 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.97       High
cufflinks 11.743        
cufflinks 27.546     High High
cufflinks 11.078        
cufflinks 23.179        
cufflinks 11.057        

0 Strain