Gene : AT1G17360 A. thaliana TAIR10
Defline:  (1 of 3) PTHR31008:SF3 - COP1-INTERACTING PROTEIN-RELATED PROTEIN-RELATED Genomic Order:  1749
Name:  ? AT1G17360 Secondary Identifier:  ? PAC:19654868
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17360 0.5kb upstream 0.5kb upstream 5210 true Chr1: 5946264-5951473 Arabidopsis thaliana
AT1G17360 0.5kb upstream 0.5kb upstream 500 false Chr1: 5946264-5946763 Arabidopsis thaliana
AT1G17360 0.5kb downstream 0.5kb downstream 5210 true Chr1: 5946764-5951973 Arabidopsis thaliana
AT1G17360 0.5kb downstream 0.5kb downstream 500 false Chr1: 5951474-5951973 Arabidopsis thaliana
AT1G17360 1.0kb upstream 1.0kb upstream 5710 true Chr1: 5945764-5951473 Arabidopsis thaliana
AT1G17360 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5945764-5946763 Arabidopsis thaliana
AT1G17360 1.0kb downstream 1.0kb downstream 5710 true Chr1: 5946764-5952473 Arabidopsis thaliana
AT1G17360 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5951474-5952473 Arabidopsis thaliana
AT1G17360 2.0kb upstream 2.0kb upstream 6710 true Chr1: 5944764-5951473 Arabidopsis thaliana
AT1G17360 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5944764-5946763 Arabidopsis thaliana
AT1G17360 2.0kb downstream 2.0kb downstream 6710 true Chr1: 5946764-5953473 Arabidopsis thaliana
AT1G17360 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5951474-5953473 Arabidopsis thaliana
AT1G17360 5.0kb upstream 5.0kb upstream 9710 true Chr1: 5941764-5951473 Arabidopsis thaliana
AT1G17360 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5941764-5946763 Arabidopsis thaliana
AT1G17360 5.0kb downstream 5.0kb downstream 9710 true Chr1: 5946764-5956473 Arabidopsis thaliana
AT1G17360 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5951474-5956473 Arabidopsis thaliana
AT1G17360 10.0kb upstream 10.0kb upstream 14710 true Chr1: 5936764-5951473 Arabidopsis thaliana
AT1G17360 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5936764-5946763 Arabidopsis thaliana
AT1G17360 10.0kb downstream 10.0kb downstream 14710 true Chr1: 5946764-5961473 Arabidopsis thaliana
AT1G17360 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5951474-5961473 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360359 5261 Brassicaceae View MSA
123797940 5264 Brassicales-Malvales View MSA
124295637 5266 SBM View MSA
124251623 5268 Malvidae View MSA
124070250 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.17        
cufflinks 26.485        
cufflinks 9.122       Low
cufflinks 24.232        
cufflinks 9.853       Low
cufflinks 25.62        

0 Strain