Gene : AlaAT1 A. thaliana TAIR10
Primary Identifier:  ? AT1G17290 Defline:  (1 of 2) K00814 - alanine transaminase (GPT, ALT)
Genomic Order:  1742 Name:  ? AT1G17290
Secondary Identifier:  ? PAC:19656393
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ALANINE-DEG3-PWY Arabidopsis thaliana pathologic  
Athaliana ALANINE-SYN2-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  
Athaliana PWY-7117 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17290 0.5kb upstream 0.5kb upstream 4271 true Chr1: 5922130-5926400 Arabidopsis thaliana
AT1G17290 0.5kb upstream 0.5kb upstream 500 false Chr1: 5922130-5922629 Arabidopsis thaliana
AT1G17290 0.5kb downstream 0.5kb downstream 4271 true Chr1: 5922630-5926900 Arabidopsis thaliana
AT1G17290 0.5kb downstream 0.5kb downstream 500 false Chr1: 5926401-5926900 Arabidopsis thaliana
AT1G17290 1.0kb upstream 1.0kb upstream 4771 true Chr1: 5921630-5926400 Arabidopsis thaliana
AT1G17290 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5921630-5922629 Arabidopsis thaliana
AT1G17290 1.0kb downstream 1.0kb downstream 4771 true Chr1: 5922630-5927400 Arabidopsis thaliana
AT1G17290 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5926401-5927400 Arabidopsis thaliana
AT1G17290 2.0kb upstream 2.0kb upstream 5771 true Chr1: 5920630-5926400 Arabidopsis thaliana
AT1G17290 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5920630-5922629 Arabidopsis thaliana
AT1G17290 2.0kb downstream 2.0kb downstream 5771 true Chr1: 5922630-5928400 Arabidopsis thaliana
AT1G17290 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5926401-5928400 Arabidopsis thaliana
AT1G17290 5.0kb upstream 5.0kb upstream 8771 true Chr1: 5917630-5926400 Arabidopsis thaliana
AT1G17290 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5917630-5922629 Arabidopsis thaliana
AT1G17290 5.0kb downstream 5.0kb downstream 8771 true Chr1: 5922630-5931400 Arabidopsis thaliana
AT1G17290 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5926401-5931400 Arabidopsis thaliana
AT1G17290 10.0kb upstream 10.0kb upstream 13771 true Chr1: 5912630-5926400 Arabidopsis thaliana
AT1G17290 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5912630-5922629 Arabidopsis thaliana
AT1G17290 10.0kb downstream 10.0kb downstream 13771 true Chr1: 5922630-5936400 Arabidopsis thaliana
AT1G17290 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5926401-5936400 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366358 5261 Brassicaceae View MSA
123836852 5264 Brassicales-Malvales View MSA
124344699 5266 SBM View MSA
124251764 5268 Malvidae View MSA
124064256 5270 Rosid View MSA
123749170 5271 Pentapetalae View MSA
122793882 5272 Eudicot View MSA
122043472 5273 Angiosperm View MSA
121347513 5274 Embryophyte View MSA
123427750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 60.259     High  
cufflinks 31.548     High Low
cufflinks 74.675     High  
cufflinks 35.606     High  
cufflinks 91.156     High High
cufflinks 37.388     High  

0 Strain