Gene : AT1G17080 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10052//PTHR10052:SF9 - 60S RIBOSOMAL PROTEIN L18A // SUBFAMILY NOT NAMED Genomic Order:  1717
Name:  ? AT1G17080 Secondary Identifier:  ? PAC:19656387
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17080 0.5kb upstream 0.5kb upstream 1838 true Chr1: 5840269-5842106 Arabidopsis thaliana
AT1G17080 0.5kb upstream 0.5kb upstream 500 false Chr1: 5841607-5842106 Arabidopsis thaliana
AT1G17080 0.5kb downstream 0.5kb downstream 1838 true Chr1: 5839769-5841606 Arabidopsis thaliana
AT1G17080 0.5kb downstream 0.5kb downstream 500 false Chr1: 5839769-5840268 Arabidopsis thaliana
AT1G17080 1.0kb upstream 1.0kb upstream 2338 true Chr1: 5840269-5842606 Arabidopsis thaliana
AT1G17080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5841607-5842606 Arabidopsis thaliana
AT1G17080 1.0kb downstream 1.0kb downstream 2338 true Chr1: 5839269-5841606 Arabidopsis thaliana
AT1G17080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5839269-5840268 Arabidopsis thaliana
AT1G17080 2.0kb upstream 2.0kb upstream 3338 true Chr1: 5840269-5843606 Arabidopsis thaliana
AT1G17080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5841607-5843606 Arabidopsis thaliana
AT1G17080 2.0kb downstream 2.0kb downstream 3338 true Chr1: 5838269-5841606 Arabidopsis thaliana
AT1G17080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5838269-5840268 Arabidopsis thaliana
AT1G17080 5.0kb upstream 5.0kb upstream 6338 true Chr1: 5840269-5846606 Arabidopsis thaliana
AT1G17080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5841607-5846606 Arabidopsis thaliana
AT1G17080 5.0kb downstream 5.0kb downstream 6338 true Chr1: 5835269-5841606 Arabidopsis thaliana
AT1G17080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5835269-5840268 Arabidopsis thaliana
AT1G17080 10.0kb upstream 10.0kb upstream 11338 true Chr1: 5840269-5851606 Arabidopsis thaliana
AT1G17080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5841607-5851606 Arabidopsis thaliana
AT1G17080 10.0kb downstream 10.0kb downstream 11338 true Chr1: 5830269-5841606 Arabidopsis thaliana
AT1G17080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5830269-5840268 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369307 5261 Brassicaceae View MSA
123838223 5264 Brassicales-Malvales View MSA
124349045 5266 SBM View MSA
124249811 5268 Malvidae View MSA
124074454 5270 Rosid View MSA
123749667 5271 Pentapetalae View MSA
122791619 5272 Eudicot View MSA
122042118 5273 Angiosperm View MSA
121350772 5274 Embryophyte View MSA
123425775 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.1     High  
cufflinks 38.179     High  
cufflinks 30.503     High Low
cufflinks 36.233     High  
cufflinks 37.204     High  
cufflinks 42.459     High High

0 Strain