Gene : ICR1 A. thaliana TAIR10
Primary Identifier:  ? AT1G17140 Defline:  (1 of 8) KOG1003 - Actin filament-coating protein tropomyosin
Genomic Order:  1723 Name:  ? AT1G17140
Secondary Identifier:  ? PAC:19650041
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17140 0.5kb upstream 0.5kb upstream 2478 true Chr1: 5856573-5859050 Arabidopsis thaliana
AT1G17140 0.5kb upstream 0.5kb upstream 500 false Chr1: 5858551-5859050 Arabidopsis thaliana
AT1G17140 0.5kb downstream 0.5kb downstream 2478 true Chr1: 5856073-5858550 Arabidopsis thaliana
AT1G17140 0.5kb downstream 0.5kb downstream 500 false Chr1: 5856073-5856572 Arabidopsis thaliana
AT1G17140 1.0kb upstream 1.0kb upstream 2978 true Chr1: 5856573-5859550 Arabidopsis thaliana
AT1G17140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5858551-5859550 Arabidopsis thaliana
AT1G17140 1.0kb downstream 1.0kb downstream 2978 true Chr1: 5855573-5858550 Arabidopsis thaliana
AT1G17140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5855573-5856572 Arabidopsis thaliana
AT1G17140 2.0kb upstream 2.0kb upstream 3978 true Chr1: 5856573-5860550 Arabidopsis thaliana
AT1G17140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5858551-5860550 Arabidopsis thaliana
AT1G17140 2.0kb downstream 2.0kb downstream 3978 true Chr1: 5854573-5858550 Arabidopsis thaliana
AT1G17140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5854573-5856572 Arabidopsis thaliana
AT1G17140 5.0kb upstream 5.0kb upstream 6978 true Chr1: 5856573-5863550 Arabidopsis thaliana
AT1G17140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5858551-5863550 Arabidopsis thaliana
AT1G17140 5.0kb downstream 5.0kb downstream 6978 true Chr1: 5851573-5858550 Arabidopsis thaliana
AT1G17140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5851573-5856572 Arabidopsis thaliana
AT1G17140 10.0kb upstream 10.0kb upstream 11978 true Chr1: 5856573-5868550 Arabidopsis thaliana
AT1G17140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5858551-5868550 Arabidopsis thaliana
AT1G17140 10.0kb downstream 10.0kb downstream 11978 true Chr1: 5846573-5858550 Arabidopsis thaliana
AT1G17140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5846573-5856572 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376603 5261 Brassicaceae View MSA
123837806 5264 Brassicales-Malvales View MSA
124336423 5266 SBM View MSA
124239559 5268 Malvidae View MSA
124061926 5270 Rosid View MSA
123741672 5271 Pentapetalae View MSA
122770101 5272 Eudicot View MSA
122042797 5273 Angiosperm View MSA
121310026 5274 Embryophyte View MSA
123347629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.623       High
cufflinks 4.792        
cufflinks 6.705        
cufflinks 4.24       Low
cufflinks 5.686        
cufflinks 6.427        

0 Strain