Gene : CAT8 A. thaliana TAIR10
Primary Identifier:  ? AT1G17120 Defline:  (1 of 1) PTHR11785:SF273 - CATIONIC AMINO ACID TRANSPORTER 8, VACUOLAR
Genomic Order:  1721 Name:  ? AT1G17120
Secondary Identifier:  ? PAC:19653268
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17120 0.5kb upstream 0.5kb upstream 2503 true Chr1: 5851453-5853955 Arabidopsis thaliana
AT1G17120 0.5kb upstream 0.5kb upstream 500 false Chr1: 5851453-5851952 Arabidopsis thaliana
AT1G17120 0.5kb downstream 0.5kb downstream 2503 true Chr1: 5851953-5854455 Arabidopsis thaliana
AT1G17120 0.5kb downstream 0.5kb downstream 500 false Chr1: 5853956-5854455 Arabidopsis thaliana
AT1G17120 1.0kb upstream 1.0kb upstream 3003 true Chr1: 5850953-5853955 Arabidopsis thaliana
AT1G17120 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5850953-5851952 Arabidopsis thaliana
AT1G17120 1.0kb downstream 1.0kb downstream 3003 true Chr1: 5851953-5854955 Arabidopsis thaliana
AT1G17120 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5853956-5854955 Arabidopsis thaliana
AT1G17120 2.0kb upstream 2.0kb upstream 4003 true Chr1: 5849953-5853955 Arabidopsis thaliana
AT1G17120 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5849953-5851952 Arabidopsis thaliana
AT1G17120 2.0kb downstream 2.0kb downstream 4003 true Chr1: 5851953-5855955 Arabidopsis thaliana
AT1G17120 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5853956-5855955 Arabidopsis thaliana
AT1G17120 5.0kb upstream 5.0kb upstream 7003 true Chr1: 5846953-5853955 Arabidopsis thaliana
AT1G17120 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5846953-5851952 Arabidopsis thaliana
AT1G17120 5.0kb downstream 5.0kb downstream 7003 true Chr1: 5851953-5858955 Arabidopsis thaliana
AT1G17120 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5853956-5858955 Arabidopsis thaliana
AT1G17120 10.0kb upstream 10.0kb upstream 12003 true Chr1: 5841953-5853955 Arabidopsis thaliana
AT1G17120 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5841953-5851952 Arabidopsis thaliana
AT1G17120 10.0kb downstream 10.0kb downstream 12003 true Chr1: 5851953-5863955 Arabidopsis thaliana
AT1G17120 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5853956-5863955 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372252 5261 Brassicaceae View MSA
123832066 5264 Brassicales-Malvales View MSA
124321773 5266 SBM View MSA
124247365 5268 Malvidae View MSA
124065749 5270 Rosid View MSA
123753183 5271 Pentapetalae View MSA
122795315 5272 Eudicot View MSA
122045421 5273 Angiosperm View MSA
121350184 5274 Embryophyte View MSA
123428616 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.032        
cufflinks 14.036        
cufflinks 11.282       Low
cufflinks 14.628        
cufflinks 11.73       Low
cufflinks 17.36       High

0 Strain