Gene : SHA A. thaliana TAIR10
Primary Identifier:  ? AT1G17040 Defline:  (1 of 2) PTHR11801 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION
Genomic Order:  1713 Name:  ? AT1G17040
Secondary Identifier:  ? PAC:19657147
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17040 0.5kb upstream 0.5kb upstream 3886 true Chr1: 5824348-5828233 Arabidopsis thaliana
AT1G17040 0.5kb upstream 0.5kb upstream 500 false Chr1: 5824348-5824847 Arabidopsis thaliana
AT1G17040 0.5kb downstream 0.5kb downstream 3886 true Chr1: 5824848-5828733 Arabidopsis thaliana
AT1G17040 0.5kb downstream 0.5kb downstream 500 false Chr1: 5828234-5828733 Arabidopsis thaliana
AT1G17040 1.0kb upstream 1.0kb upstream 4386 true Chr1: 5823848-5828233 Arabidopsis thaliana
AT1G17040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5823848-5824847 Arabidopsis thaliana
AT1G17040 1.0kb downstream 1.0kb downstream 4386 true Chr1: 5824848-5829233 Arabidopsis thaliana
AT1G17040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5828234-5829233 Arabidopsis thaliana
AT1G17040 2.0kb upstream 2.0kb upstream 5386 true Chr1: 5822848-5828233 Arabidopsis thaliana
AT1G17040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5822848-5824847 Arabidopsis thaliana
AT1G17040 2.0kb downstream 2.0kb downstream 5386 true Chr1: 5824848-5830233 Arabidopsis thaliana
AT1G17040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5828234-5830233 Arabidopsis thaliana
AT1G17040 5.0kb upstream 5.0kb upstream 8386 true Chr1: 5819848-5828233 Arabidopsis thaliana
AT1G17040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5819848-5824847 Arabidopsis thaliana
AT1G17040 5.0kb downstream 5.0kb downstream 8386 true Chr1: 5824848-5833233 Arabidopsis thaliana
AT1G17040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5828234-5833233 Arabidopsis thaliana
AT1G17040 10.0kb upstream 10.0kb upstream 13386 true Chr1: 5814848-5828233 Arabidopsis thaliana
AT1G17040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5814848-5824847 Arabidopsis thaliana
AT1G17040 10.0kb downstream 10.0kb downstream 13386 true Chr1: 5824848-5838233 Arabidopsis thaliana
AT1G17040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5828234-5838233 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365768 5261 Brassicaceae View MSA
123837315 5264 Brassicales-Malvales View MSA
124342395 5266 SBM View MSA
124238773 5268 Malvidae View MSA
124067056 5270 Rosid View MSA
123736368 5271 Pentapetalae View MSA
122785651 5272 Eudicot View MSA
122044134 5273 Angiosperm View MSA
121347247 5274 Embryophyte View MSA
123380519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.318        
cufflinks 1.616        
cufflinks 1.146       Low
cufflinks 1.649       High
cufflinks 1.1       Low
cufflinks 1.505        

0 Strain