Gene : UBP15 A. thaliana TAIR10
Primary Identifier:  ? AT1G17110 Defline:  (1 of 9) K11855 - ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] (USP36_42)
Genomic Order:  1720 Name:  ? AT1G17110
Secondary Identifier:  ? PAC:19654189
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G17110 0.5kb upstream 0.5kb upstream 5775 true Chr1: 5845660-5851434 Arabidopsis thaliana
AT1G17110 0.5kb upstream 0.5kb upstream 500 false Chr1: 5850935-5851434 Arabidopsis thaliana
AT1G17110 0.5kb downstream 0.5kb downstream 5775 true Chr1: 5845160-5850934 Arabidopsis thaliana
AT1G17110 0.5kb downstream 0.5kb downstream 500 false Chr1: 5845160-5845659 Arabidopsis thaliana
AT1G17110 1.0kb upstream 1.0kb upstream 6275 true Chr1: 5845660-5851934 Arabidopsis thaliana
AT1G17110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5850935-5851934 Arabidopsis thaliana
AT1G17110 1.0kb downstream 1.0kb downstream 6275 true Chr1: 5844660-5850934 Arabidopsis thaliana
AT1G17110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5844660-5845659 Arabidopsis thaliana
AT1G17110 2.0kb upstream 2.0kb upstream 7275 true Chr1: 5845660-5852934 Arabidopsis thaliana
AT1G17110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5850935-5852934 Arabidopsis thaliana
AT1G17110 2.0kb downstream 2.0kb downstream 7275 true Chr1: 5843660-5850934 Arabidopsis thaliana
AT1G17110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5843660-5845659 Arabidopsis thaliana
AT1G17110 5.0kb upstream 5.0kb upstream 10275 true Chr1: 5845660-5855934 Arabidopsis thaliana
AT1G17110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5850935-5855934 Arabidopsis thaliana
AT1G17110 5.0kb downstream 5.0kb downstream 10275 true Chr1: 5840660-5850934 Arabidopsis thaliana
AT1G17110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5840660-5845659 Arabidopsis thaliana
AT1G17110 10.0kb upstream 10.0kb upstream 15275 true Chr1: 5845660-5860934 Arabidopsis thaliana
AT1G17110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5850935-5860934 Arabidopsis thaliana
AT1G17110 10.0kb downstream 10.0kb downstream 15275 true Chr1: 5835660-5850934 Arabidopsis thaliana
AT1G17110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5835660-5845659 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376233 5261 Brassicaceae View MSA
123835041 5264 Brassicales-Malvales View MSA
124338426 5266 SBM View MSA
124250449 5268 Malvidae View MSA
124069029 5270 Rosid View MSA
123741406 5271 Pentapetalae View MSA
122770044 5272 Eudicot View MSA
122046939 5273 Angiosperm View MSA
121350818 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.31        
cufflinks 7.23        
cufflinks 6.123       Low
cufflinks 7.132        
cufflinks 6.238       Low
cufflinks 7.261        

0 Strain