Gene : HCF173 A. thaliana TAIR10
Primary Identifier:  ? AT1G16720 Defline:  (1 of 1) PTHR10366//PTHR10366:SF343 - NAD DEPENDENT EPIMERASE/DEHYDRATASE // SUBFAMILY NOT NAMED
Genomic Order:  1678 Name:  ? AT1G16720
Secondary Identifier:  ? PAC:19654625
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16720 0.5kb upstream 0.5kb upstream 3891 true Chr1: 5722588-5726478 Arabidopsis thaliana
AT1G16720 0.5kb upstream 0.5kb upstream 500 false Chr1: 5722588-5723087 Arabidopsis thaliana
AT1G16720 0.5kb downstream 0.5kb downstream 3891 true Chr1: 5723088-5726978 Arabidopsis thaliana
AT1G16720 0.5kb downstream 0.5kb downstream 500 false Chr1: 5726479-5726978 Arabidopsis thaliana
AT1G16720 1.0kb upstream 1.0kb upstream 4391 true Chr1: 5722088-5726478 Arabidopsis thaliana
AT1G16720 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5722088-5723087 Arabidopsis thaliana
AT1G16720 1.0kb downstream 1.0kb downstream 4391 true Chr1: 5723088-5727478 Arabidopsis thaliana
AT1G16720 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5726479-5727478 Arabidopsis thaliana
AT1G16720 2.0kb upstream 2.0kb upstream 5391 true Chr1: 5721088-5726478 Arabidopsis thaliana
AT1G16720 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5721088-5723087 Arabidopsis thaliana
AT1G16720 2.0kb downstream 2.0kb downstream 5391 true Chr1: 5723088-5728478 Arabidopsis thaliana
AT1G16720 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5726479-5728478 Arabidopsis thaliana
AT1G16720 5.0kb upstream 5.0kb upstream 8391 true Chr1: 5718088-5726478 Arabidopsis thaliana
AT1G16720 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5718088-5723087 Arabidopsis thaliana
AT1G16720 5.0kb downstream 5.0kb downstream 8391 true Chr1: 5723088-5731478 Arabidopsis thaliana
AT1G16720 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5726479-5731478 Arabidopsis thaliana
AT1G16720 10.0kb upstream 10.0kb upstream 13391 true Chr1: 5713088-5726478 Arabidopsis thaliana
AT1G16720 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5713088-5723087 Arabidopsis thaliana
AT1G16720 10.0kb downstream 10.0kb downstream 13391 true Chr1: 5723088-5736478 Arabidopsis thaliana
AT1G16720 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5726479-5736478 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373721 5261 Brassicaceae View MSA
123838625 5264 Brassicales-Malvales View MSA
124340565 5266 SBM View MSA
124242246 5268 Malvidae View MSA
124060991 5270 Rosid View MSA
123739581 5271 Pentapetalae View MSA
122792894 5272 Eudicot View MSA
122046159 5273 Angiosperm View MSA
121349944 5274 Embryophyte View MSA
123424676 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.23     High  
cufflinks 5.084        
cufflinks 39.396     High  
cufflinks 4.871        
cufflinks 45.971     High High
cufflinks 4.254        

0 Strain