Gene : VHP2;2 A. thaliana TAIR10
Primary Identifier:  ? AT1G16780 Defline:  (1 of 2) PTHR31998//PTHR31998:SF11 - FAMILY NOT NAMED // PYROPHOSPHATE-ENERGIZED MEMBRANE PROTON PUMP 2-RELATED
Genomic Order:  1684 Name:  ? AT1G16780
Secondary Identifier:  ? PAC:19654440
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16780 0.5kb upstream 0.5kb upstream 5416 true Chr1: 5739299-5744714 Arabidopsis thaliana
AT1G16780 0.5kb upstream 0.5kb upstream 500 false Chr1: 5744215-5744714 Arabidopsis thaliana
AT1G16780 0.5kb downstream 0.5kb downstream 5416 true Chr1: 5738799-5744214 Arabidopsis thaliana
AT1G16780 0.5kb downstream 0.5kb downstream 500 false Chr1: 5738799-5739298 Arabidopsis thaliana
AT1G16780 1.0kb upstream 1.0kb upstream 5916 true Chr1: 5739299-5745214 Arabidopsis thaliana
AT1G16780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5744215-5745214 Arabidopsis thaliana
AT1G16780 1.0kb downstream 1.0kb downstream 5916 true Chr1: 5738299-5744214 Arabidopsis thaliana
AT1G16780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5738299-5739298 Arabidopsis thaliana
AT1G16780 2.0kb upstream 2.0kb upstream 6916 true Chr1: 5739299-5746214 Arabidopsis thaliana
AT1G16780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5744215-5746214 Arabidopsis thaliana
AT1G16780 2.0kb downstream 2.0kb downstream 6916 true Chr1: 5737299-5744214 Arabidopsis thaliana
AT1G16780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5737299-5739298 Arabidopsis thaliana
AT1G16780 5.0kb upstream 5.0kb upstream 9916 true Chr1: 5739299-5749214 Arabidopsis thaliana
AT1G16780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5744215-5749214 Arabidopsis thaliana
AT1G16780 5.0kb downstream 5.0kb downstream 9916 true Chr1: 5734299-5744214 Arabidopsis thaliana
AT1G16780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5734299-5739298 Arabidopsis thaliana
AT1G16780 10.0kb upstream 10.0kb upstream 14916 true Chr1: 5739299-5754214 Arabidopsis thaliana
AT1G16780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5744215-5754214 Arabidopsis thaliana
AT1G16780 10.0kb downstream 10.0kb downstream 14916 true Chr1: 5729299-5744214 Arabidopsis thaliana
AT1G16780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5729299-5739298 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122344135 5261 Brassicaceae View MSA
123836730 5264 Brassicales-Malvales View MSA
124345298 5266 SBM View MSA
124239465 5268 Malvidae View MSA
124067461 5270 Rosid View MSA
123745513 5271 Pentapetalae View MSA
122786142 5272 Eudicot View MSA
122044345 5273 Angiosperm View MSA
121350028 5274 Embryophyte View MSA
123424450 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.926        
cufflinks 6.682       High
cufflinks 3.743        
cufflinks 5.826        
cufflinks 3.321       Low
cufflinks 6.744       High

0 Strain