Gene : GAPCP-2 A. thaliana TAIR10
Primary Identifier:  ? AT1G16300 Defline:  (1 of 2) PTHR10836//PTHR10836:SF46 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED
Genomic Order:  1639 Name:  ? AT1G16300
Secondary Identifier:  ? PAC:19649451
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ANAEROFRUCAT-PWY Arabidopsis thaliana pathologic  
Athaliana ANAGLYCOLYSIS-PWY Arabidopsis thaliana pathologic  
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-1042 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16300 0.5kb upstream 0.5kb upstream 3813 true Chr1: 5573810-5577622 Arabidopsis thaliana
AT1G16300 0.5kb upstream 0.5kb upstream 500 false Chr1: 5573810-5574309 Arabidopsis thaliana
AT1G16300 0.5kb downstream 0.5kb downstream 3813 true Chr1: 5574310-5578122 Arabidopsis thaliana
AT1G16300 0.5kb downstream 0.5kb downstream 500 false Chr1: 5577623-5578122 Arabidopsis thaliana
AT1G16300 1.0kb upstream 1.0kb upstream 4313 true Chr1: 5573310-5577622 Arabidopsis thaliana
AT1G16300 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5573310-5574309 Arabidopsis thaliana
AT1G16300 1.0kb downstream 1.0kb downstream 4313 true Chr1: 5574310-5578622 Arabidopsis thaliana
AT1G16300 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5577623-5578622 Arabidopsis thaliana
AT1G16300 2.0kb upstream 2.0kb upstream 5313 true Chr1: 5572310-5577622 Arabidopsis thaliana
AT1G16300 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5572310-5574309 Arabidopsis thaliana
AT1G16300 2.0kb downstream 2.0kb downstream 5313 true Chr1: 5574310-5579622 Arabidopsis thaliana
AT1G16300 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5577623-5579622 Arabidopsis thaliana
AT1G16300 5.0kb upstream 5.0kb upstream 8313 true Chr1: 5569310-5577622 Arabidopsis thaliana
AT1G16300 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5569310-5574309 Arabidopsis thaliana
AT1G16300 5.0kb downstream 5.0kb downstream 8313 true Chr1: 5574310-5582622 Arabidopsis thaliana
AT1G16300 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5577623-5582622 Arabidopsis thaliana
AT1G16300 10.0kb upstream 10.0kb upstream 13313 true Chr1: 5564310-5577622 Arabidopsis thaliana
AT1G16300 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5564310-5574309 Arabidopsis thaliana
AT1G16300 10.0kb downstream 10.0kb downstream 13313 true Chr1: 5574310-5587622 Arabidopsis thaliana
AT1G16300 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5577623-5587622 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374998 5261 Brassicaceae View MSA
123836882 5264 Brassicales-Malvales View MSA
124346127 5266 SBM View MSA
124243370 5268 Malvidae View MSA
124063810 5270 Rosid View MSA
123738168 5271 Pentapetalae View MSA
122792653 5272 Eudicot View MSA
122042179 5273 Angiosperm View MSA
121345581 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.478        
cufflinks 7.11        
cufflinks 1.098       Low
cufflinks 8.441        
cufflinks 1.421        
cufflinks 7.666        

0 Strain