Gene : ATKDSA2 A. thaliana TAIR10
Primary Identifier:  ? AT1G16340 Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase
Genomic Order:  1643 Name:  ? AT1G16340
Secondary Identifier:  ? PAC:19657193
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1269 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G16340 0.5kb upstream 0.5kb upstream 3362 true Chr1: 5587790-5591151 Arabidopsis thaliana
AT1G16340 0.5kb upstream 0.5kb upstream 500 false Chr1: 5590652-5591151 Arabidopsis thaliana
AT1G16340 0.5kb downstream 0.5kb downstream 3362 true Chr1: 5587290-5590651 Arabidopsis thaliana
AT1G16340 0.5kb downstream 0.5kb downstream 500 false Chr1: 5587290-5587789 Arabidopsis thaliana
AT1G16340 1.0kb upstream 1.0kb upstream 3862 true Chr1: 5587790-5591651 Arabidopsis thaliana
AT1G16340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5590652-5591651 Arabidopsis thaliana
AT1G16340 1.0kb downstream 1.0kb downstream 3862 true Chr1: 5586790-5590651 Arabidopsis thaliana
AT1G16340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5586790-5587789 Arabidopsis thaliana
AT1G16340 2.0kb upstream 2.0kb upstream 4862 true Chr1: 5587790-5592651 Arabidopsis thaliana
AT1G16340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5590652-5592651 Arabidopsis thaliana
AT1G16340 2.0kb downstream 2.0kb downstream 4862 true Chr1: 5585790-5590651 Arabidopsis thaliana
AT1G16340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5585790-5587789 Arabidopsis thaliana
AT1G16340 5.0kb upstream 5.0kb upstream 7862 true Chr1: 5587790-5595651 Arabidopsis thaliana
AT1G16340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5590652-5595651 Arabidopsis thaliana
AT1G16340 5.0kb downstream 5.0kb downstream 7862 true Chr1: 5582790-5590651 Arabidopsis thaliana
AT1G16340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5582790-5587789 Arabidopsis thaliana
AT1G16340 10.0kb upstream 10.0kb upstream 12862 true Chr1: 5587790-5600651 Arabidopsis thaliana
AT1G16340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5590652-5600651 Arabidopsis thaliana
AT1G16340 10.0kb downstream 10.0kb downstream 12862 true Chr1: 5577790-5590651 Arabidopsis thaliana
AT1G16340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5577790-5587789 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379396 5261 Brassicaceae View MSA
123829711 5264 Brassicales-Malvales View MSA
124345040 5266 SBM View MSA
124244021 5268 Malvidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.396       Low
cufflinks 2.31        
cufflinks 1.835        
cufflinks 2.489       High
cufflinks 1.723        
cufflinks 2.185        

0 Strain