Gene : AT1G15940 A. thaliana TAIR10
Defline:  (1 of 3) PTHR12663//PTHR12663:SF3 - ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED // ASPARTYL BETA-HYDROXYLASE N-TERMINAL REGION DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  1604
Name:  ? AT1G15940 Secondary Identifier:  ? PAC:19655510
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15940 0.5kb upstream 0.5kb upstream 5195 true Chr1: 5473065-5478259 Arabidopsis thaliana
AT1G15940 0.5kb upstream 0.5kb upstream 500 false Chr1: 5473065-5473564 Arabidopsis thaliana
AT1G15940 0.5kb downstream 0.5kb downstream 5195 true Chr1: 5473565-5478759 Arabidopsis thaliana
AT1G15940 0.5kb downstream 0.5kb downstream 500 false Chr1: 5478260-5478759 Arabidopsis thaliana
AT1G15940 1.0kb upstream 1.0kb upstream 5695 true Chr1: 5472565-5478259 Arabidopsis thaliana
AT1G15940 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5472565-5473564 Arabidopsis thaliana
AT1G15940 1.0kb downstream 1.0kb downstream 5695 true Chr1: 5473565-5479259 Arabidopsis thaliana
AT1G15940 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5478260-5479259 Arabidopsis thaliana
AT1G15940 2.0kb upstream 2.0kb upstream 6695 true Chr1: 5471565-5478259 Arabidopsis thaliana
AT1G15940 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5471565-5473564 Arabidopsis thaliana
AT1G15940 2.0kb downstream 2.0kb downstream 6695 true Chr1: 5473565-5480259 Arabidopsis thaliana
AT1G15940 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5478260-5480259 Arabidopsis thaliana
AT1G15940 5.0kb upstream 5.0kb upstream 9695 true Chr1: 5468565-5478259 Arabidopsis thaliana
AT1G15940 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5468565-5473564 Arabidopsis thaliana
AT1G15940 5.0kb downstream 5.0kb downstream 9695 true Chr1: 5473565-5483259 Arabidopsis thaliana
AT1G15940 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5478260-5483259 Arabidopsis thaliana
AT1G15940 10.0kb upstream 10.0kb upstream 14695 true Chr1: 5463565-5478259 Arabidopsis thaliana
AT1G15940 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5463565-5473564 Arabidopsis thaliana
AT1G15940 10.0kb downstream 10.0kb downstream 14695 true Chr1: 5473565-5488259 Arabidopsis thaliana
AT1G15940 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5478260-5488259 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367969 5261 Brassicaceae View MSA
123838757 5264 Brassicales-Malvales View MSA
124322495 5266 SBM View MSA
124251613 5268 Malvidae View MSA
124073544 5270 Rosid View MSA
123751665 5271 Pentapetalae View MSA
122793321 5272 Eudicot View MSA
122042349 5273 Angiosperm View MSA
121309949 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.589        
cufflinks 15.345        
cufflinks 6.929       Low
cufflinks 15.522        
cufflinks 7.527       Low
cufflinks 14.392        

0 Strain