Gene : AT1G15730 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13748//PTHR13748:SF43 - COBW-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1579
Name:  ? AT1G15730 Secondary Identifier:  ? PAC:19657837
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15730 0.5kb upstream 0.5kb upstream 3087 true Chr1: 5407401-5410487 Arabidopsis thaliana
AT1G15730 0.5kb upstream 0.5kb upstream 500 false Chr1: 5409988-5410487 Arabidopsis thaliana
AT1G15730 0.5kb downstream 0.5kb downstream 3087 true Chr1: 5406901-5409987 Arabidopsis thaliana
AT1G15730 0.5kb downstream 0.5kb downstream 500 false Chr1: 5406901-5407400 Arabidopsis thaliana
AT1G15730 1.0kb upstream 1.0kb upstream 3587 true Chr1: 5407401-5410987 Arabidopsis thaliana
AT1G15730 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5409988-5410987 Arabidopsis thaliana
AT1G15730 1.0kb downstream 1.0kb downstream 3587 true Chr1: 5406401-5409987 Arabidopsis thaliana
AT1G15730 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5406401-5407400 Arabidopsis thaliana
AT1G15730 2.0kb upstream 2.0kb upstream 4587 true Chr1: 5407401-5411987 Arabidopsis thaliana
AT1G15730 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5409988-5411987 Arabidopsis thaliana
AT1G15730 2.0kb downstream 2.0kb downstream 4587 true Chr1: 5405401-5409987 Arabidopsis thaliana
AT1G15730 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5405401-5407400 Arabidopsis thaliana
AT1G15730 5.0kb upstream 5.0kb upstream 7587 true Chr1: 5407401-5414987 Arabidopsis thaliana
AT1G15730 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5409988-5414987 Arabidopsis thaliana
AT1G15730 5.0kb downstream 5.0kb downstream 7587 true Chr1: 5402401-5409987 Arabidopsis thaliana
AT1G15730 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5402401-5407400 Arabidopsis thaliana
AT1G15730 10.0kb upstream 10.0kb upstream 12587 true Chr1: 5407401-5419987 Arabidopsis thaliana
AT1G15730 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5409988-5419987 Arabidopsis thaliana
AT1G15730 10.0kb downstream 10.0kb downstream 12587 true Chr1: 5397401-5409987 Arabidopsis thaliana
AT1G15730 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5397401-5407400 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368377 5261 Brassicaceae View MSA
123799556 5264 Brassicales-Malvales View MSA
124297066 5266 SBM View MSA
124250435 5268 Malvidae View MSA
124064492 5270 Rosid View MSA
123740688 5271 Pentapetalae View MSA
122793124 5272 Eudicot View MSA
122047317 5273 Angiosperm View MSA
121346816 5274 Embryophyte View MSA
123428327 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.679        
cufflinks 14.127        
cufflinks 32.597     High High
cufflinks 6.375       Low
cufflinks 28.745     High  
cufflinks 8.521        

0 Strain