Gene : AT1G15480 A. thaliana TAIR10
Defline:  (1 of 14) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1556
Name:  ? AT1G15480 Secondary Identifier:  ? PAC:19656460
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15480 0.5kb upstream 0.5kb upstream 3084 true Chr1: 5317511-5320594 Arabidopsis thaliana
AT1G15480 0.5kb upstream 0.5kb upstream 500 false Chr1: 5317511-5318010 Arabidopsis thaliana
AT1G15480 0.5kb downstream 0.5kb downstream 3084 true Chr1: 5318011-5321094 Arabidopsis thaliana
AT1G15480 0.5kb downstream 0.5kb downstream 500 false Chr1: 5320595-5321094 Arabidopsis thaliana
AT1G15480 1.0kb upstream 1.0kb upstream 3584 true Chr1: 5317011-5320594 Arabidopsis thaliana
AT1G15480 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5317011-5318010 Arabidopsis thaliana
AT1G15480 1.0kb downstream 1.0kb downstream 3584 true Chr1: 5318011-5321594 Arabidopsis thaliana
AT1G15480 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5320595-5321594 Arabidopsis thaliana
AT1G15480 2.0kb upstream 2.0kb upstream 4584 true Chr1: 5316011-5320594 Arabidopsis thaliana
AT1G15480 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5316011-5318010 Arabidopsis thaliana
AT1G15480 2.0kb downstream 2.0kb downstream 4584 true Chr1: 5318011-5322594 Arabidopsis thaliana
AT1G15480 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5320595-5322594 Arabidopsis thaliana
AT1G15480 5.0kb upstream 5.0kb upstream 7584 true Chr1: 5313011-5320594 Arabidopsis thaliana
AT1G15480 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5313011-5318010 Arabidopsis thaliana
AT1G15480 5.0kb downstream 5.0kb downstream 7584 true Chr1: 5318011-5325594 Arabidopsis thaliana
AT1G15480 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5320595-5325594 Arabidopsis thaliana
AT1G15480 10.0kb upstream 10.0kb upstream 12584 true Chr1: 5308011-5320594 Arabidopsis thaliana
AT1G15480 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5308011-5318010 Arabidopsis thaliana
AT1G15480 10.0kb downstream 10.0kb downstream 12584 true Chr1: 5318011-5330594 Arabidopsis thaliana
AT1G15480 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5320595-5330594 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363716 5261 Brassicaceae View MSA
123838872 5264 Brassicales-Malvales View MSA
124337336 5266 SBM View MSA
124238154 5268 Malvidae View MSA
124068490 5270 Rosid View MSA
123736856 5271 Pentapetalae View MSA
122790484 5272 Eudicot View MSA
122044724 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.346        
cufflinks 5.849        
cufflinks 3.67       Low
cufflinks 6.692        
cufflinks 3.529       Low
cufflinks 6.773        

0 Strain