Gene : AT1G15290 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12601:SF18 - TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  1537
Name:  ? AT1G15290 Secondary Identifier:  ? PAC:19652130
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15290 0.5kb upstream 0.5kb upstream 8397 true Chr1: 5257046-5265442 Arabidopsis thaliana
AT1G15290 0.5kb upstream 0.5kb upstream 500 false Chr1: 5264943-5265442 Arabidopsis thaliana
AT1G15290 0.5kb downstream 0.5kb downstream 8397 true Chr1: 5256546-5264942 Arabidopsis thaliana
AT1G15290 0.5kb downstream 0.5kb downstream 500 false Chr1: 5256546-5257045 Arabidopsis thaliana
AT1G15290 1.0kb upstream 1.0kb upstream 8897 true Chr1: 5257046-5265942 Arabidopsis thaliana
AT1G15290 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5264943-5265942 Arabidopsis thaliana
AT1G15290 1.0kb downstream 1.0kb downstream 8897 true Chr1: 5256046-5264942 Arabidopsis thaliana
AT1G15290 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5256046-5257045 Arabidopsis thaliana
AT1G15290 2.0kb upstream 2.0kb upstream 9897 true Chr1: 5257046-5266942 Arabidopsis thaliana
AT1G15290 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5264943-5266942 Arabidopsis thaliana
AT1G15290 2.0kb downstream 2.0kb downstream 9897 true Chr1: 5255046-5264942 Arabidopsis thaliana
AT1G15290 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5255046-5257045 Arabidopsis thaliana
AT1G15290 5.0kb upstream 5.0kb upstream 12897 true Chr1: 5257046-5269942 Arabidopsis thaliana
AT1G15290 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5264943-5269942 Arabidopsis thaliana
AT1G15290 5.0kb downstream 5.0kb downstream 12897 true Chr1: 5252046-5264942 Arabidopsis thaliana
AT1G15290 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5252046-5257045 Arabidopsis thaliana
AT1G15290 10.0kb upstream 10.0kb upstream 17897 true Chr1: 5257046-5274942 Arabidopsis thaliana
AT1G15290 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5264943-5274942 Arabidopsis thaliana
AT1G15290 10.0kb downstream 10.0kb downstream 17897 true Chr1: 5247046-5264942 Arabidopsis thaliana
AT1G15290 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5247046-5257045 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369106 5261 Brassicaceae View MSA
123832970 5264 Brassicales-Malvales View MSA
124346506 5266 SBM View MSA
124243651 5268 Malvidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.935        
cufflinks 1.944       Low
cufflinks 19.968        
cufflinks 4.476        
cufflinks 17.9        
cufflinks 2.831        

0 Strain