Gene : AT1G15200 A. thaliana TAIR10
Defline:  (1 of 1) K13114 - pinin (PNN) Genomic Order:  1527
Name:  ? AT1G15200 Secondary Identifier:  ? PAC:19652055
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G15200 0.5kb upstream 0.5kb upstream 3385 true Chr1: 5228300-5231684 Arabidopsis thaliana
AT1G15200 0.5kb upstream 0.5kb upstream 500 false Chr1: 5231185-5231684 Arabidopsis thaliana
AT1G15200 0.5kb downstream 0.5kb downstream 3385 true Chr1: 5227800-5231184 Arabidopsis thaliana
AT1G15200 0.5kb downstream 0.5kb downstream 500 false Chr1: 5227800-5228299 Arabidopsis thaliana
AT1G15200 1.0kb upstream 1.0kb upstream 3885 true Chr1: 5228300-5232184 Arabidopsis thaliana
AT1G15200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 5231185-5232184 Arabidopsis thaliana
AT1G15200 1.0kb downstream 1.0kb downstream 3885 true Chr1: 5227300-5231184 Arabidopsis thaliana
AT1G15200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 5227300-5228299 Arabidopsis thaliana
AT1G15200 2.0kb upstream 2.0kb upstream 4885 true Chr1: 5228300-5233184 Arabidopsis thaliana
AT1G15200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 5231185-5233184 Arabidopsis thaliana
AT1G15200 2.0kb downstream 2.0kb downstream 4885 true Chr1: 5226300-5231184 Arabidopsis thaliana
AT1G15200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 5226300-5228299 Arabidopsis thaliana
AT1G15200 5.0kb upstream 5.0kb upstream 7885 true Chr1: 5228300-5236184 Arabidopsis thaliana
AT1G15200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 5231185-5236184 Arabidopsis thaliana
AT1G15200 5.0kb downstream 5.0kb downstream 7885 true Chr1: 5223300-5231184 Arabidopsis thaliana
AT1G15200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 5223300-5228299 Arabidopsis thaliana
AT1G15200 10.0kb upstream 10.0kb upstream 12885 true Chr1: 5228300-5241184 Arabidopsis thaliana
AT1G15200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 5231185-5241184 Arabidopsis thaliana
AT1G15200 10.0kb downstream 10.0kb downstream 12885 true Chr1: 5218300-5231184 Arabidopsis thaliana
AT1G15200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 5218300-5228299 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363318 5261 Brassicaceae View MSA
123832772 5264 Brassicales-Malvales View MSA
124342581 5266 SBM View MSA
124239356 5268 Malvidae View MSA
124061315 5270 Rosid View MSA
123738009 5271 Pentapetalae View MSA
122786181 5272 Eudicot View MSA
122046264 5273 Angiosperm View MSA
121351481 5274 Embryophyte View MSA
123426416 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.253        
cufflinks 9.22       High
cufflinks 5.253        
cufflinks 9.191       High
cufflinks 4.77       Low
cufflinks 7.454        

0 Strain