Gene : AT1G13830 A. thaliana TAIR10
Defline:  (1 of 2) PTHR32227:SF56 - CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN Genomic Order:  1378
Name:  ? AT1G13830 Secondary Identifier:  ? PAC:19657549
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13830 0.5kb upstream 0.5kb upstream 1666 true Chr1: 4739873-4741538 Arabidopsis thaliana
AT1G13830 0.5kb upstream 0.5kb upstream 500 false Chr1: 4741039-4741538 Arabidopsis thaliana
AT1G13830 0.5kb downstream 0.5kb downstream 1666 true Chr1: 4739373-4741038 Arabidopsis thaliana
AT1G13830 0.5kb downstream 0.5kb downstream 500 false Chr1: 4739373-4739872 Arabidopsis thaliana
AT1G13830 1.0kb upstream 1.0kb upstream 2166 true Chr1: 4739873-4742038 Arabidopsis thaliana
AT1G13830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4741039-4742038 Arabidopsis thaliana
AT1G13830 1.0kb downstream 1.0kb downstream 2166 true Chr1: 4738873-4741038 Arabidopsis thaliana
AT1G13830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4738873-4739872 Arabidopsis thaliana
AT1G13830 2.0kb upstream 2.0kb upstream 3166 true Chr1: 4739873-4743038 Arabidopsis thaliana
AT1G13830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4741039-4743038 Arabidopsis thaliana
AT1G13830 2.0kb downstream 2.0kb downstream 3166 true Chr1: 4737873-4741038 Arabidopsis thaliana
AT1G13830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4737873-4739872 Arabidopsis thaliana
AT1G13830 5.0kb upstream 5.0kb upstream 6166 true Chr1: 4739873-4746038 Arabidopsis thaliana
AT1G13830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4741039-4746038 Arabidopsis thaliana
AT1G13830 5.0kb downstream 5.0kb downstream 6166 true Chr1: 4734873-4741038 Arabidopsis thaliana
AT1G13830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4734873-4739872 Arabidopsis thaliana
AT1G13830 10.0kb upstream 10.0kb upstream 11166 true Chr1: 4739873-4751038 Arabidopsis thaliana
AT1G13830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4741039-4751038 Arabidopsis thaliana
AT1G13830 10.0kb downstream 10.0kb downstream 11166 true Chr1: 4729873-4741038 Arabidopsis thaliana
AT1G13830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4729873-4739872 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375529 5261 Brassicaceae View MSA
123838948 5264 Brassicales-Malvales View MSA
124346861 5266 SBM View MSA
124249346 5268 Malvidae View MSA
124070571 5270 Rosid View MSA
123747854 5271 Pentapetalae View MSA
122786677 5272 Eudicot View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.996        
cufflinks 1.707        
cufflinks 0.683       Low
cufflinks 2.899       High
cufflinks 1.347        
cufflinks 1.939        

0 Strain