Gene : GAPC2 A. thaliana TAIR10
Primary Identifier:  ? AT1G13440 Defline:  (1 of 2) PTHR10836:SF53 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC2, CYTOSOLIC
Genomic Order:  1334 Name:  ? AT1G13440
Secondary Identifier:  ? PAC:19657714
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ANAEROFRUCAT-PWY Arabidopsis thaliana pathologic  
Athaliana ANAGLYCOLYSIS-PWY Arabidopsis thaliana pathologic  
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-1042 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13440 0.5kb upstream 0.5kb upstream 2952 true Chr1: 4608196-4611147 Arabidopsis thaliana
AT1G13440 0.5kb upstream 0.5kb upstream 500 false Chr1: 4610648-4611147 Arabidopsis thaliana
AT1G13440 0.5kb downstream 0.5kb downstream 2952 true Chr1: 4607696-4610647 Arabidopsis thaliana
AT1G13440 0.5kb downstream 0.5kb downstream 500 false Chr1: 4607696-4608195 Arabidopsis thaliana
AT1G13440 1.0kb upstream 1.0kb upstream 3452 true Chr1: 4608196-4611647 Arabidopsis thaliana
AT1G13440 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4610648-4611647 Arabidopsis thaliana
AT1G13440 1.0kb downstream 1.0kb downstream 3452 true Chr1: 4607196-4610647 Arabidopsis thaliana
AT1G13440 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4607196-4608195 Arabidopsis thaliana
AT1G13440 2.0kb upstream 2.0kb upstream 4452 true Chr1: 4608196-4612647 Arabidopsis thaliana
AT1G13440 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4610648-4612647 Arabidopsis thaliana
AT1G13440 2.0kb downstream 2.0kb downstream 4452 true Chr1: 4606196-4610647 Arabidopsis thaliana
AT1G13440 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4606196-4608195 Arabidopsis thaliana
AT1G13440 5.0kb upstream 5.0kb upstream 7452 true Chr1: 4608196-4615647 Arabidopsis thaliana
AT1G13440 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4610648-4615647 Arabidopsis thaliana
AT1G13440 5.0kb downstream 5.0kb downstream 7452 true Chr1: 4603196-4610647 Arabidopsis thaliana
AT1G13440 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4603196-4608195 Arabidopsis thaliana
AT1G13440 10.0kb upstream 10.0kb upstream 12452 true Chr1: 4608196-4620647 Arabidopsis thaliana
AT1G13440 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4610648-4620647 Arabidopsis thaliana
AT1G13440 10.0kb downstream 10.0kb downstream 12452 true Chr1: 4598196-4610647 Arabidopsis thaliana
AT1G13440 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4598196-4608195 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381041 5261 Brassicaceae View MSA
123840158 5264 Brassicales-Malvales View MSA
124346732 5266 SBM View MSA
124250703 5268 Malvidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 183.61     High  
cufflinks 203.333     High  
cufflinks 172.176     High  
cufflinks 195.517     High  
cufflinks 149.939     High Low
cufflinks 196.654     High  

0 Strain