Gene : MAP1C A. thaliana TAIR10
Primary Identifier:  ? AT1G13270 Defline:  (1 of 2) PTHR10804:SF68 - METHIONINE AMINOPEPTIDASE 1B, CHLOROPLASTIC
Genomic Order:  1317 Name:  ? AT1G13270
Secondary Identifier:  ? PAC:19656766
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G13270 0.5kb upstream 0.5kb upstream 2860 true Chr1: 4544453-4547312 Arabidopsis thaliana
AT1G13270 0.5kb upstream 0.5kb upstream 500 false Chr1: 4544453-4544952 Arabidopsis thaliana
AT1G13270 0.5kb downstream 0.5kb downstream 2860 true Chr1: 4544953-4547812 Arabidopsis thaliana
AT1G13270 0.5kb downstream 0.5kb downstream 500 false Chr1: 4547313-4547812 Arabidopsis thaliana
AT1G13270 1.0kb upstream 1.0kb upstream 3360 true Chr1: 4543953-4547312 Arabidopsis thaliana
AT1G13270 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4543953-4544952 Arabidopsis thaliana
AT1G13270 1.0kb downstream 1.0kb downstream 3360 true Chr1: 4544953-4548312 Arabidopsis thaliana
AT1G13270 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4547313-4548312 Arabidopsis thaliana
AT1G13270 2.0kb upstream 2.0kb upstream 4360 true Chr1: 4542953-4547312 Arabidopsis thaliana
AT1G13270 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4542953-4544952 Arabidopsis thaliana
AT1G13270 2.0kb downstream 2.0kb downstream 4360 true Chr1: 4544953-4549312 Arabidopsis thaliana
AT1G13270 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4547313-4549312 Arabidopsis thaliana
AT1G13270 5.0kb upstream 5.0kb upstream 7360 true Chr1: 4539953-4547312 Arabidopsis thaliana
AT1G13270 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4539953-4544952 Arabidopsis thaliana
AT1G13270 5.0kb downstream 5.0kb downstream 7360 true Chr1: 4544953-4552312 Arabidopsis thaliana
AT1G13270 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4547313-4552312 Arabidopsis thaliana
AT1G13270 10.0kb upstream 10.0kb upstream 12360 true Chr1: 4534953-4547312 Arabidopsis thaliana
AT1G13270 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4534953-4544952 Arabidopsis thaliana
AT1G13270 10.0kb downstream 10.0kb downstream 12360 true Chr1: 4544953-4557312 Arabidopsis thaliana
AT1G13270 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4547313-4557312 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375910 5261 Brassicaceae View MSA
123827434 5264 Brassicales-Malvales View MSA
124338961 5266 SBM View MSA
124242071 5268 Malvidae View MSA
124066750 5270 Rosid View MSA
123749440 5271 Pentapetalae View MSA
122791523 5272 Eudicot View MSA
122046775 5273 Angiosperm View MSA
123429177 5275 Viridiplantae View MSA
121348768 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.984       High
cufflinks 2.605        
cufflinks 16.864        
cufflinks 2.629        
cufflinks 13.848        
cufflinks 2.697        

0 Strain