Gene : AT1G04130 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22904//PTHR22904:SF312 - TPR REPEAT CONTAINING PROTEIN // CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN Genomic Order:  327
Name:  ? AT1G04130 Secondary Identifier:  ? PAC:19656252
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04130 0.5kb upstream 0.5kb upstream 2642 true Chr1: 1072927-1075568 Arabidopsis thaliana
AT1G04130 0.5kb upstream 0.5kb upstream 500 false Chr1: 1072927-1073426 Arabidopsis thaliana
AT1G04130 0.5kb downstream 0.5kb downstream 2642 true Chr1: 1073427-1076068 Arabidopsis thaliana
AT1G04130 0.5kb downstream 0.5kb downstream 500 false Chr1: 1075569-1076068 Arabidopsis thaliana
AT1G04130 1.0kb upstream 1.0kb upstream 3142 true Chr1: 1072427-1075568 Arabidopsis thaliana
AT1G04130 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1072427-1073426 Arabidopsis thaliana
AT1G04130 1.0kb downstream 1.0kb downstream 3142 true Chr1: 1073427-1076568 Arabidopsis thaliana
AT1G04130 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1075569-1076568 Arabidopsis thaliana
AT1G04130 2.0kb upstream 2.0kb upstream 4142 true Chr1: 1071427-1075568 Arabidopsis thaliana
AT1G04130 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1071427-1073426 Arabidopsis thaliana
AT1G04130 2.0kb downstream 2.0kb downstream 4142 true Chr1: 1073427-1077568 Arabidopsis thaliana
AT1G04130 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1075569-1077568 Arabidopsis thaliana
AT1G04130 5.0kb upstream 5.0kb upstream 7142 true Chr1: 1068427-1075568 Arabidopsis thaliana
AT1G04130 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1068427-1073426 Arabidopsis thaliana
AT1G04130 5.0kb downstream 5.0kb downstream 7142 true Chr1: 1073427-1080568 Arabidopsis thaliana
AT1G04130 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1075569-1080568 Arabidopsis thaliana
AT1G04130 10.0kb upstream 10.0kb upstream 12142 true Chr1: 1063427-1075568 Arabidopsis thaliana
AT1G04130 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1063427-1073426 Arabidopsis thaliana
AT1G04130 10.0kb downstream 10.0kb downstream 12142 true Chr1: 1073427-1085568 Arabidopsis thaliana
AT1G04130 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1075569-1085568 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368149 5261 Brassicaceae View MSA
123828408 5264 Brassicales-Malvales View MSA
124339676 5266 SBM View MSA
124254043 5268 Malvidae View MSA
124068096 5270 Rosid View MSA
123752266 5271 Pentapetalae View MSA
122787898 5272 Eudicot View MSA
122046706 5273 Angiosperm View MSA
121343893 5274 Embryophyte View MSA
123425417 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.132        
cufflinks 7.295        
cufflinks 4.815        
cufflinks 7.814       High
cufflinks 4.287       Low
cufflinks 7.046        

0 Strain