Gene : SDD1 A. thaliana TAIR10
Primary Identifier:  ? AT1G04110 Defline:  (1 of 1) PTHR10795//PTHR10795:SF350 - PROPROTEIN CONVERTASE SUBTILISIN/KEXIN // SUBTILISIN-LIKE PROTEASE SDD1
Genomic Order:  325 Name:  ? AT1G04110
Secondary Identifier:  ? PAC:19652802
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04110 0.5kb upstream 0.5kb upstream 2828 true Chr1: 1061457-1064284 Arabidopsis thaliana
AT1G04110 0.5kb upstream 0.5kb upstream 500 false Chr1: 1063785-1064284 Arabidopsis thaliana
AT1G04110 0.5kb downstream 0.5kb downstream 2828 true Chr1: 1060957-1063784 Arabidopsis thaliana
AT1G04110 0.5kb downstream 0.5kb downstream 500 false Chr1: 1060957-1061456 Arabidopsis thaliana
AT1G04110 1.0kb upstream 1.0kb upstream 3328 true Chr1: 1061457-1064784 Arabidopsis thaliana
AT1G04110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1063785-1064784 Arabidopsis thaliana
AT1G04110 1.0kb downstream 1.0kb downstream 3328 true Chr1: 1060457-1063784 Arabidopsis thaliana
AT1G04110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1060457-1061456 Arabidopsis thaliana
AT1G04110 2.0kb upstream 2.0kb upstream 4328 true Chr1: 1061457-1065784 Arabidopsis thaliana
AT1G04110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1063785-1065784 Arabidopsis thaliana
AT1G04110 2.0kb downstream 2.0kb downstream 4328 true Chr1: 1059457-1063784 Arabidopsis thaliana
AT1G04110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1059457-1061456 Arabidopsis thaliana
AT1G04110 5.0kb upstream 5.0kb upstream 7328 true Chr1: 1061457-1068784 Arabidopsis thaliana
AT1G04110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1063785-1068784 Arabidopsis thaliana
AT1G04110 5.0kb downstream 5.0kb downstream 7328 true Chr1: 1056457-1063784 Arabidopsis thaliana
AT1G04110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1056457-1061456 Arabidopsis thaliana
AT1G04110 10.0kb upstream 10.0kb upstream 12328 true Chr1: 1061457-1073784 Arabidopsis thaliana
AT1G04110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1063785-1073784 Arabidopsis thaliana
AT1G04110 10.0kb downstream 10.0kb downstream 12328 true Chr1: 1051457-1063784 Arabidopsis thaliana
AT1G04110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1051457-1061456 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369058 5261 Brassicaceae View MSA
123834857 5264 Brassicales-Malvales View MSA
124350917 5266 SBM View MSA
124249593 5268 Malvidae View MSA
124074709 5270 Rosid View MSA
123751509 5271 Pentapetalae View MSA
122797256 5272 Eudicot View MSA
122051606 5273 Angiosperm View MSA
121349729 5274 Embryophyte View MSA
123428602 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.168       High
cufflinks 0.045     Low  
cufflinks 1.574        
cufflinks 0.034     Low Low
cufflinks 0.948        
cufflinks 0.055     Low  

0 Strain