Gene : AT1G03330 A. thaliana TAIR10
Defline:  (1 of 1) K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Genomic Order:  249
Name:  ? AT1G03330 Secondary Identifier:  ? PAC:19654221
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G03330 0.5kb upstream 0.5kb upstream 2081 true Chr1: 817983-820063 Arabidopsis thaliana
AT1G03330 0.5kb upstream 0.5kb upstream 500 false Chr1: 819564-820063 Arabidopsis thaliana
AT1G03330 0.5kb downstream 0.5kb downstream 2081 true Chr1: 817483-819563 Arabidopsis thaliana
AT1G03330 0.5kb downstream 0.5kb downstream 500 false Chr1: 817483-817982 Arabidopsis thaliana
AT1G03330 1.0kb upstream 1.0kb upstream 2581 true Chr1: 817983-820563 Arabidopsis thaliana
AT1G03330 1.0kb upstream 1.0kb upstream 1000 false Chr1: 819564-820563 Arabidopsis thaliana
AT1G03330 1.0kb downstream 1.0kb downstream 2581 true Chr1: 816983-819563 Arabidopsis thaliana
AT1G03330 1.0kb downstream 1.0kb downstream 1000 false Chr1: 816983-817982 Arabidopsis thaliana
AT1G03330 2.0kb upstream 2.0kb upstream 3581 true Chr1: 817983-821563 Arabidopsis thaliana
AT1G03330 2.0kb upstream 2.0kb upstream 2000 false Chr1: 819564-821563 Arabidopsis thaliana
AT1G03330 2.0kb downstream 2.0kb downstream 3581 true Chr1: 815983-819563 Arabidopsis thaliana
AT1G03330 2.0kb downstream 2.0kb downstream 2000 false Chr1: 815983-817982 Arabidopsis thaliana
AT1G03330 5.0kb upstream 5.0kb upstream 6581 true Chr1: 817983-824563 Arabidopsis thaliana
AT1G03330 5.0kb upstream 5.0kb upstream 5000 false Chr1: 819564-824563 Arabidopsis thaliana
AT1G03330 5.0kb downstream 5.0kb downstream 6581 true Chr1: 812983-819563 Arabidopsis thaliana
AT1G03330 5.0kb downstream 5.0kb downstream 5000 false Chr1: 812983-817982 Arabidopsis thaliana
AT1G03330 10.0kb upstream 10.0kb upstream 11581 true Chr1: 817983-829563 Arabidopsis thaliana
AT1G03330 10.0kb upstream 10.0kb upstream 10000 false Chr1: 819564-829563 Arabidopsis thaliana
AT1G03330 10.0kb downstream 10.0kb downstream 11581 true Chr1: 807983-819563 Arabidopsis thaliana
AT1G03330 10.0kb downstream 10.0kb downstream 10000 false Chr1: 807983-817982 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369459 5261 Brassicaceae View MSA
123835229 5264 Brassicales-Malvales View MSA
124339903 5266 SBM View MSA
124250520 5268 Malvidae View MSA
124061118 5270 Rosid View MSA
123743245 5271 Pentapetalae View MSA
122795918 5272 Eudicot View MSA
122043046 5273 Angiosperm View MSA
121347447 5274 Embryophyte View MSA
123425045 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.519        
cufflinks 20.277       High
cufflinks 15.127       Low
cufflinks 19.595        
cufflinks 15.906        
cufflinks 18.685        

0 Strain