Gene : AT1G02300 A. thaliana TAIR10
Defline:  (1 of 3) 3.4.22.1 - Cathepsin B / Cathepsin B1 Genomic Order:  136
Name:  ? AT1G02300 Secondary Identifier:  ? PAC:19651664
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G02300 0.5kb upstream 0.5kb upstream 2676 true Chr1: 452788-455463 Arabidopsis thaliana
AT1G02300 0.5kb upstream 0.5kb upstream 500 false Chr1: 452788-453287 Arabidopsis thaliana
AT1G02300 0.5kb downstream 0.5kb downstream 2676 true Chr1: 453288-455963 Arabidopsis thaliana
AT1G02300 0.5kb downstream 0.5kb downstream 500 false Chr1: 455464-455963 Arabidopsis thaliana
AT1G02300 1.0kb upstream 1.0kb upstream 3176 true Chr1: 452288-455463 Arabidopsis thaliana
AT1G02300 1.0kb upstream 1.0kb upstream 1000 false Chr1: 452288-453287 Arabidopsis thaliana
AT1G02300 1.0kb downstream 1.0kb downstream 3176 true Chr1: 453288-456463 Arabidopsis thaliana
AT1G02300 1.0kb downstream 1.0kb downstream 1000 false Chr1: 455464-456463 Arabidopsis thaliana
AT1G02300 2.0kb upstream 2.0kb upstream 4176 true Chr1: 451288-455463 Arabidopsis thaliana
AT1G02300 2.0kb upstream 2.0kb upstream 2000 false Chr1: 451288-453287 Arabidopsis thaliana
AT1G02300 2.0kb downstream 2.0kb downstream 4176 true Chr1: 453288-457463 Arabidopsis thaliana
AT1G02300 2.0kb downstream 2.0kb downstream 2000 false Chr1: 455464-457463 Arabidopsis thaliana
AT1G02300 5.0kb upstream 5.0kb upstream 7176 true Chr1: 448288-455463 Arabidopsis thaliana
AT1G02300 5.0kb upstream 5.0kb upstream 5000 false Chr1: 448288-453287 Arabidopsis thaliana
AT1G02300 5.0kb downstream 5.0kb downstream 7176 true Chr1: 453288-460463 Arabidopsis thaliana
AT1G02300 5.0kb downstream 5.0kb downstream 5000 false Chr1: 455464-460463 Arabidopsis thaliana
AT1G02300 10.0kb upstream 10.0kb upstream 12176 true Chr1: 443288-455463 Arabidopsis thaliana
AT1G02300 10.0kb upstream 10.0kb upstream 10000 false Chr1: 443288-453287 Arabidopsis thaliana
AT1G02300 10.0kb downstream 10.0kb downstream 12176 true Chr1: 453288-465463 Arabidopsis thaliana
AT1G02300 10.0kb downstream 10.0kb downstream 10000 false Chr1: 455464-465463 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332177 5261 Brassicaceae View MSA
123773276 5264 Brassicales-Malvales View MSA
124271768 5266 SBM View MSA
124249605 5268 Malvidae View MSA
124067927 5270 Rosid View MSA
123736413 5271 Pentapetalae View MSA
122793546 5272 Eudicot View MSA
122041719 5273 Angiosperm View MSA
121345003 5274 Embryophyte View MSA
123427014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.448        
cufflinks 13.323        
cufflinks 11.629        
cufflinks 10.382       Low
cufflinks 13.862       High
cufflinks 10.013       Low

0 Strain