Gene : LAP6 A. thaliana TAIR10
Primary Identifier:  ? AT1G02050 Defline:  (1 of 3) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED
Genomic Order:  109 Name:  ? AT1G02050
Secondary Identifier:  ? PAC:19650450
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G02050 0.5kb upstream 0.5kb upstream 1902 true Chr1: 359117-361018 Arabidopsis thaliana
AT1G02050 0.5kb upstream 0.5kb upstream 500 false Chr1: 360519-361018 Arabidopsis thaliana
AT1G02050 0.5kb downstream 0.5kb downstream 1902 true Chr1: 358617-360518 Arabidopsis thaliana
AT1G02050 0.5kb downstream 0.5kb downstream 500 false Chr1: 358617-359116 Arabidopsis thaliana
AT1G02050 1.0kb upstream 1.0kb upstream 2402 true Chr1: 359117-361518 Arabidopsis thaliana
AT1G02050 1.0kb upstream 1.0kb upstream 1000 false Chr1: 360519-361518 Arabidopsis thaliana
AT1G02050 1.0kb downstream 1.0kb downstream 2402 true Chr1: 358117-360518 Arabidopsis thaliana
AT1G02050 1.0kb downstream 1.0kb downstream 1000 false Chr1: 358117-359116 Arabidopsis thaliana
AT1G02050 2.0kb upstream 2.0kb upstream 3402 true Chr1: 359117-362518 Arabidopsis thaliana
AT1G02050 2.0kb upstream 2.0kb upstream 2000 false Chr1: 360519-362518 Arabidopsis thaliana
AT1G02050 2.0kb downstream 2.0kb downstream 3402 true Chr1: 357117-360518 Arabidopsis thaliana
AT1G02050 2.0kb downstream 2.0kb downstream 2000 false Chr1: 357117-359116 Arabidopsis thaliana
AT1G02050 5.0kb upstream 5.0kb upstream 6402 true Chr1: 359117-365518 Arabidopsis thaliana
AT1G02050 5.0kb upstream 5.0kb upstream 5000 false Chr1: 360519-365518 Arabidopsis thaliana
AT1G02050 5.0kb downstream 5.0kb downstream 6402 true Chr1: 354117-360518 Arabidopsis thaliana
AT1G02050 5.0kb downstream 5.0kb downstream 5000 false Chr1: 354117-359116 Arabidopsis thaliana
AT1G02050 10.0kb upstream 10.0kb upstream 11402 true Chr1: 359117-370518 Arabidopsis thaliana
AT1G02050 10.0kb upstream 10.0kb upstream 10000 false Chr1: 360519-370518 Arabidopsis thaliana
AT1G02050 10.0kb downstream 10.0kb downstream 11402 true Chr1: 349117-360518 Arabidopsis thaliana
AT1G02050 10.0kb downstream 10.0kb downstream 10000 false Chr1: 349117-359116 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376828 5261 Brassicaceae View MSA
123828982 5264 Brassicales-Malvales View MSA
124336806 5266 SBM View MSA
124239117 5268 Malvidae View MSA
124068304 5270 Rosid View MSA
123739380 5271 Pentapetalae View MSA
122792095 5272 Eudicot View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.543        
cufflinks 9.512       High
cufflinks 4.477        
cufflinks 9.548       High
cufflinks 4.526        
cufflinks 6.251        

0 Strain