Gene : AT1G09820 A. thaliana TAIR10
Defline:  (1 of 423) PF13041 - PPR repeat family (PPR_2) Genomic Order:  943
Name:  ? AT1G09820 Secondary Identifier:  ? PAC:19656716
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G09820 0.5kb upstream 0.5kb upstream 2627 true Chr1: 3190288-3192914 Arabidopsis thaliana
AT1G09820 0.5kb upstream 0.5kb upstream 500 false Chr1: 3192415-3192914 Arabidopsis thaliana
AT1G09820 0.5kb downstream 0.5kb downstream 2627 true Chr1: 3189788-3192414 Arabidopsis thaliana
AT1G09820 0.5kb downstream 0.5kb downstream 500 false Chr1: 3189788-3190287 Arabidopsis thaliana
AT1G09820 1.0kb upstream 1.0kb upstream 3127 true Chr1: 3190288-3193414 Arabidopsis thaliana
AT1G09820 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3192415-3193414 Arabidopsis thaliana
AT1G09820 1.0kb downstream 1.0kb downstream 3127 true Chr1: 3189288-3192414 Arabidopsis thaliana
AT1G09820 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3189288-3190287 Arabidopsis thaliana
AT1G09820 2.0kb upstream 2.0kb upstream 4127 true Chr1: 3190288-3194414 Arabidopsis thaliana
AT1G09820 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3192415-3194414 Arabidopsis thaliana
AT1G09820 2.0kb downstream 2.0kb downstream 4127 true Chr1: 3188288-3192414 Arabidopsis thaliana
AT1G09820 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3188288-3190287 Arabidopsis thaliana
AT1G09820 5.0kb upstream 5.0kb upstream 7127 true Chr1: 3190288-3197414 Arabidopsis thaliana
AT1G09820 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3192415-3197414 Arabidopsis thaliana
AT1G09820 5.0kb downstream 5.0kb downstream 7127 true Chr1: 3185288-3192414 Arabidopsis thaliana
AT1G09820 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3185288-3190287 Arabidopsis thaliana
AT1G09820 10.0kb upstream 10.0kb upstream 12127 true Chr1: 3190288-3202414 Arabidopsis thaliana
AT1G09820 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3192415-3202414 Arabidopsis thaliana
AT1G09820 10.0kb downstream 10.0kb downstream 12127 true Chr1: 3180288-3192414 Arabidopsis thaliana
AT1G09820 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3180288-3190287 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360803 5261 Brassicaceae View MSA
123828371 5264 Brassicales-Malvales View MSA
124338279 5266 SBM View MSA
124242335 5268 Malvidae View MSA
124067693 5270 Rosid View MSA
123738221 5271 Pentapetalae View MSA
122794420 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.033        
cufflinks 3.868        
cufflinks 2.598        
cufflinks 4.522       High
cufflinks 2.304       Low
cufflinks 3.737        

0 Strain