Gene : AT1G12230 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10683//PTHR10683:SF10 - TRANSALDOLASE // TRANSALDOLASE-LIKE PROTEIN Genomic Order:  1207
Name:  ? AT1G12230 Secondary Identifier:  ? PAC:19656189
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana NONOXIPENT-PWY Arabidopsis thaliana pathologic  
Athaliana PENTOSE-P-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5723 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G12230 0.5kb upstream 0.5kb upstream 3595 true Chr1: 4147462-4151056 Arabidopsis thaliana
AT1G12230 0.5kb upstream 0.5kb upstream 500 false Chr1: 4147462-4147961 Arabidopsis thaliana
AT1G12230 0.5kb downstream 0.5kb downstream 3595 true Chr1: 4147962-4151556 Arabidopsis thaliana
AT1G12230 0.5kb downstream 0.5kb downstream 500 false Chr1: 4151057-4151556 Arabidopsis thaliana
AT1G12230 1.0kb upstream 1.0kb upstream 4095 true Chr1: 4146962-4151056 Arabidopsis thaliana
AT1G12230 1.0kb upstream 1.0kb upstream 1000 false Chr1: 4146962-4147961 Arabidopsis thaliana
AT1G12230 1.0kb downstream 1.0kb downstream 4095 true Chr1: 4147962-4152056 Arabidopsis thaliana
AT1G12230 1.0kb downstream 1.0kb downstream 1000 false Chr1: 4151057-4152056 Arabidopsis thaliana
AT1G12230 2.0kb upstream 2.0kb upstream 5095 true Chr1: 4145962-4151056 Arabidopsis thaliana
AT1G12230 2.0kb upstream 2.0kb upstream 2000 false Chr1: 4145962-4147961 Arabidopsis thaliana
AT1G12230 2.0kb downstream 2.0kb downstream 5095 true Chr1: 4147962-4153056 Arabidopsis thaliana
AT1G12230 2.0kb downstream 2.0kb downstream 2000 false Chr1: 4151057-4153056 Arabidopsis thaliana
AT1G12230 5.0kb upstream 5.0kb upstream 8095 true Chr1: 4142962-4151056 Arabidopsis thaliana
AT1G12230 5.0kb upstream 5.0kb upstream 5000 false Chr1: 4142962-4147961 Arabidopsis thaliana
AT1G12230 5.0kb downstream 5.0kb downstream 8095 true Chr1: 4147962-4156056 Arabidopsis thaliana
AT1G12230 5.0kb downstream 5.0kb downstream 5000 false Chr1: 4151057-4156056 Arabidopsis thaliana
AT1G12230 10.0kb upstream 10.0kb upstream 13095 true Chr1: 4137962-4151056 Arabidopsis thaliana
AT1G12230 10.0kb upstream 10.0kb upstream 10000 false Chr1: 4137962-4147961 Arabidopsis thaliana
AT1G12230 10.0kb downstream 10.0kb downstream 13095 true Chr1: 4147962-4161056 Arabidopsis thaliana
AT1G12230 10.0kb downstream 10.0kb downstream 10000 false Chr1: 4151057-4161056 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367260 5261 Brassicaceae View MSA
123834447 5264 Brassicales-Malvales View MSA
124345800 5266 SBM View MSA
124238554 5268 Malvidae View MSA
124061321 5270 Rosid View MSA
123737527 5271 Pentapetalae View MSA
122787081 5272 Eudicot View MSA
122043979 5273 Angiosperm View MSA
121346789 5274 Embryophyte View MSA
123424119 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.546       Low
cufflinks 10.717        
cufflinks 13.602       High
cufflinks 9.797        
cufflinks 11.923        
cufflinks 11.584        

0 Strain