Gene : AT1G05870 A. thaliana TAIR10
Defline:  (1 of 13) PF07939 - Protein of unknown function (DUF1685) (DUF1685) Genomic Order:  517
Name:  ? AT1G05870 Secondary Identifier:  ? PAC:19650767
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05870 0.5kb upstream 0.5kb upstream 2337 true Chr1: 1771457-1773793 Arabidopsis thaliana
AT1G05870 0.5kb upstream 0.5kb upstream 500 false Chr1: 1773294-1773793 Arabidopsis thaliana
AT1G05870 0.5kb downstream 0.5kb downstream 2337 true Chr1: 1770957-1773293 Arabidopsis thaliana
AT1G05870 0.5kb downstream 0.5kb downstream 500 false Chr1: 1770957-1771456 Arabidopsis thaliana
AT1G05870 1.0kb upstream 1.0kb upstream 2837 true Chr1: 1771457-1774293 Arabidopsis thaliana
AT1G05870 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1773294-1774293 Arabidopsis thaliana
AT1G05870 1.0kb downstream 1.0kb downstream 2837 true Chr1: 1770457-1773293 Arabidopsis thaliana
AT1G05870 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1770457-1771456 Arabidopsis thaliana
AT1G05870 2.0kb upstream 2.0kb upstream 3837 true Chr1: 1771457-1775293 Arabidopsis thaliana
AT1G05870 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1773294-1775293 Arabidopsis thaliana
AT1G05870 2.0kb downstream 2.0kb downstream 3837 true Chr1: 1769457-1773293 Arabidopsis thaliana
AT1G05870 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1769457-1771456 Arabidopsis thaliana
AT1G05870 5.0kb upstream 5.0kb upstream 6837 true Chr1: 1771457-1778293 Arabidopsis thaliana
AT1G05870 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1773294-1778293 Arabidopsis thaliana
AT1G05870 5.0kb downstream 5.0kb downstream 6837 true Chr1: 1766457-1773293 Arabidopsis thaliana
AT1G05870 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1766457-1771456 Arabidopsis thaliana
AT1G05870 10.0kb upstream 10.0kb upstream 11837 true Chr1: 1771457-1783293 Arabidopsis thaliana
AT1G05870 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1773294-1783293 Arabidopsis thaliana
AT1G05870 10.0kb downstream 10.0kb downstream 11837 true Chr1: 1761457-1773293 Arabidopsis thaliana
AT1G05870 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1761457-1771456 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377649 5261 Brassicaceae View MSA
123837386 5264 Brassicales-Malvales View MSA
124350178 5266 SBM View MSA
124242501 5268 Malvidae View MSA
124067258 5270 Rosid View MSA
123744509 5271 Pentapetalae View MSA
122793651 5272 Eudicot View MSA
122045124 5273 Angiosperm View MSA
121348379 5274 Embryophyte View MSA
123380837 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.656        
cufflinks 7.859        
cufflinks 2.708        
cufflinks 6.93        
cufflinks 2.164       Low
cufflinks 9.13       High

0 Strain