Gene : AT1G08580 A. thaliana TAIR10
Genomic Order:  808 Name:  ? AT1G08580
Secondary Identifier:  ? PAC:19658020
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08580 0.5kb upstream 0.5kb upstream 1826 true Chr1: 2715079-2716904 Arabidopsis thaliana
AT1G08580 0.5kb upstream 0.5kb upstream 500 false Chr1: 2716405-2716904 Arabidopsis thaliana
AT1G08580 0.5kb downstream 0.5kb downstream 1826 true Chr1: 2714579-2716404 Arabidopsis thaliana
AT1G08580 0.5kb downstream 0.5kb downstream 500 false Chr1: 2714579-2715078 Arabidopsis thaliana
AT1G08580 1.0kb upstream 1.0kb upstream 2326 true Chr1: 2715079-2717404 Arabidopsis thaliana
AT1G08580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2716405-2717404 Arabidopsis thaliana
AT1G08580 1.0kb downstream 1.0kb downstream 2326 true Chr1: 2714079-2716404 Arabidopsis thaliana
AT1G08580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2714079-2715078 Arabidopsis thaliana
AT1G08580 2.0kb upstream 2.0kb upstream 3326 true Chr1: 2715079-2718404 Arabidopsis thaliana
AT1G08580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2716405-2718404 Arabidopsis thaliana
AT1G08580 2.0kb downstream 2.0kb downstream 3326 true Chr1: 2713079-2716404 Arabidopsis thaliana
AT1G08580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2713079-2715078 Arabidopsis thaliana
AT1G08580 5.0kb upstream 5.0kb upstream 6326 true Chr1: 2715079-2721404 Arabidopsis thaliana
AT1G08580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2716405-2721404 Arabidopsis thaliana
AT1G08580 5.0kb downstream 5.0kb downstream 6326 true Chr1: 2710079-2716404 Arabidopsis thaliana
AT1G08580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2710079-2715078 Arabidopsis thaliana
AT1G08580 10.0kb upstream 10.0kb upstream 11326 true Chr1: 2715079-2726404 Arabidopsis thaliana
AT1G08580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2716405-2726404 Arabidopsis thaliana
AT1G08580 10.0kb downstream 10.0kb downstream 11326 true Chr1: 2705079-2716404 Arabidopsis thaliana
AT1G08580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2705079-2715078 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041180 5273 Angiosperm View MSA
122360974 5261 Brassicaceae View MSA
123828168 5264 Brassicales-Malvales View MSA
124342488 5266 SBM View MSA
124249486 5268 Malvidae View MSA
124066650 5270 Rosid View MSA
123738304 5271 Pentapetalae View MSA
122786914 5272 Eudicot View MSA
121349243 5274 Embryophyte View MSA
123381233 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.392        
cufflinks 25.244        
cufflinks 15.122        
cufflinks 23.411        
cufflinks 12.897       Low
cufflinks 29.226       High

0 Strain