Gene : AT1G10390 A. thaliana TAIR10
Defline:  (1 of 3) K14297 - nuclear pore complex protein Nup98-Nup96 (NUP98, ADAR2, NUP116) Genomic Order:  1002
Name:  ? AT1G10390 Secondary Identifier:  ? PAC:19657923
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G10390 0.5kb upstream 0.5kb upstream 6320 true Chr1: 3407024-3413343 Arabidopsis thaliana
AT1G10390 0.5kb upstream 0.5kb upstream 500 false Chr1: 3412844-3413343 Arabidopsis thaliana
AT1G10390 0.5kb downstream 0.5kb downstream 6320 true Chr1: 3406524-3412843 Arabidopsis thaliana
AT1G10390 0.5kb downstream 0.5kb downstream 500 false Chr1: 3406524-3407023 Arabidopsis thaliana
AT1G10390 1.0kb upstream 1.0kb upstream 6820 true Chr1: 3407024-3413843 Arabidopsis thaliana
AT1G10390 1.0kb upstream 1.0kb upstream 1000 false Chr1: 3412844-3413843 Arabidopsis thaliana
AT1G10390 1.0kb downstream 1.0kb downstream 6820 true Chr1: 3406024-3412843 Arabidopsis thaliana
AT1G10390 1.0kb downstream 1.0kb downstream 1000 false Chr1: 3406024-3407023 Arabidopsis thaliana
AT1G10390 2.0kb upstream 2.0kb upstream 7820 true Chr1: 3407024-3414843 Arabidopsis thaliana
AT1G10390 2.0kb upstream 2.0kb upstream 2000 false Chr1: 3412844-3414843 Arabidopsis thaliana
AT1G10390 2.0kb downstream 2.0kb downstream 7820 true Chr1: 3405024-3412843 Arabidopsis thaliana
AT1G10390 2.0kb downstream 2.0kb downstream 2000 false Chr1: 3405024-3407023 Arabidopsis thaliana
AT1G10390 5.0kb upstream 5.0kb upstream 10820 true Chr1: 3407024-3417843 Arabidopsis thaliana
AT1G10390 5.0kb upstream 5.0kb upstream 5000 false Chr1: 3412844-3417843 Arabidopsis thaliana
AT1G10390 5.0kb downstream 5.0kb downstream 10820 true Chr1: 3402024-3412843 Arabidopsis thaliana
AT1G10390 5.0kb downstream 5.0kb downstream 5000 false Chr1: 3402024-3407023 Arabidopsis thaliana
AT1G10390 10.0kb upstream 10.0kb upstream 15820 true Chr1: 3407024-3422843 Arabidopsis thaliana
AT1G10390 10.0kb upstream 10.0kb upstream 10000 false Chr1: 3412844-3422843 Arabidopsis thaliana
AT1G10390 10.0kb downstream 10.0kb downstream 15820 true Chr1: 3397024-3412843 Arabidopsis thaliana
AT1G10390 10.0kb downstream 10.0kb downstream 10000 false Chr1: 3397024-3407023 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366384 5261 Brassicaceae View MSA
123831227 5264 Brassicales-Malvales View MSA
124341872 5266 SBM View MSA
124253768 5268 Malvidae View MSA
124061864 5270 Rosid View MSA
123748776 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.455       Low
cufflinks 10.39        
cufflinks 6.669        
cufflinks 10.894       High
cufflinks 7.222        
cufflinks 10.524        

0 Strain