Gene : VPS41 A. thaliana TAIR10
Primary Identifier:  ? AT1G08190 Defline:  (1 of 2) PTHR12616 - VACUOLAR PROTEIN SORTING VPS41
Genomic Order:  769 Name:  ? AT1G08190
Secondary Identifier:  ? PAC:19651371
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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08190 0.5kb upstream 0.5kb upstream 6419 true Chr1: 2566975-2573393 Arabidopsis thaliana
AT1G08190 0.5kb upstream 0.5kb upstream 500 false Chr1: 2566975-2567474 Arabidopsis thaliana
AT1G08190 0.5kb downstream 0.5kb downstream 6419 true Chr1: 2567475-2573893 Arabidopsis thaliana
AT1G08190 0.5kb downstream 0.5kb downstream 500 false Chr1: 2573394-2573893 Arabidopsis thaliana
AT1G08190 1.0kb upstream 1.0kb upstream 6919 true Chr1: 2566475-2573393 Arabidopsis thaliana
AT1G08190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2566475-2567474 Arabidopsis thaliana
AT1G08190 1.0kb downstream 1.0kb downstream 6919 true Chr1: 2567475-2574393 Arabidopsis thaliana
AT1G08190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2573394-2574393 Arabidopsis thaliana
AT1G08190 2.0kb upstream 2.0kb upstream 7919 true Chr1: 2565475-2573393 Arabidopsis thaliana
AT1G08190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2565475-2567474 Arabidopsis thaliana
AT1G08190 2.0kb downstream 2.0kb downstream 7919 true Chr1: 2567475-2575393 Arabidopsis thaliana
AT1G08190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2573394-2575393 Arabidopsis thaliana
AT1G08190 5.0kb upstream 5.0kb upstream 10919 true Chr1: 2562475-2573393 Arabidopsis thaliana
AT1G08190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2562475-2567474 Arabidopsis thaliana
AT1G08190 5.0kb downstream 5.0kb downstream 10919 true Chr1: 2567475-2578393 Arabidopsis thaliana
AT1G08190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2573394-2578393 Arabidopsis thaliana
AT1G08190 10.0kb upstream 10.0kb upstream 15919 true Chr1: 2557475-2573393 Arabidopsis thaliana
AT1G08190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2557475-2567474 Arabidopsis thaliana
AT1G08190 10.0kb downstream 10.0kb downstream 15919 true Chr1: 2567475-2583393 Arabidopsis thaliana
AT1G08190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2573394-2583393 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360357 5261 Brassicaceae View MSA
123828754 5264 Brassicales-Malvales View MSA
124343707 5266 SBM View MSA
124242429 5268 Malvidae View MSA
124066764 5270 Rosid View MSA
123748111 5271 Pentapetalae View MSA
122793294 5272 Eudicot View MSA
122046390 5273 Angiosperm View MSA
121347260 5274 Embryophyte View MSA
123424469 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.573        
cufflinks 27.91        
cufflinks 13.699       Low
cufflinks 26.664        
cufflinks 12.303       Low
cufflinks 34.886     High High

0 Strain