Gene : AT1G08040 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31210//PTHR31210:SF13 - FAMILY NOT NAMED // STORAGE PROTEIN-RELATED Genomic Order:  750
Name:  ? AT1G08040 Secondary Identifier:  ? PAC:19649816
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08040 0.5kb upstream 0.5kb upstream 3923 true Chr1: 2495342-2499264 Arabidopsis thaliana
AT1G08040 0.5kb upstream 0.5kb upstream 500 false Chr1: 2498765-2499264 Arabidopsis thaliana
AT1G08040 0.5kb downstream 0.5kb downstream 3923 true Chr1: 2494842-2498764 Arabidopsis thaliana
AT1G08040 0.5kb downstream 0.5kb downstream 500 false Chr1: 2494842-2495341 Arabidopsis thaliana
AT1G08040 1.0kb upstream 1.0kb upstream 4423 true Chr1: 2495342-2499764 Arabidopsis thaliana
AT1G08040 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2498765-2499764 Arabidopsis thaliana
AT1G08040 1.0kb downstream 1.0kb downstream 4423 true Chr1: 2494342-2498764 Arabidopsis thaliana
AT1G08040 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2494342-2495341 Arabidopsis thaliana
AT1G08040 2.0kb upstream 2.0kb upstream 5423 true Chr1: 2495342-2500764 Arabidopsis thaliana
AT1G08040 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2498765-2500764 Arabidopsis thaliana
AT1G08040 2.0kb downstream 2.0kb downstream 5423 true Chr1: 2493342-2498764 Arabidopsis thaliana
AT1G08040 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2493342-2495341 Arabidopsis thaliana
AT1G08040 5.0kb upstream 5.0kb upstream 8423 true Chr1: 2495342-2503764 Arabidopsis thaliana
AT1G08040 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2498765-2503764 Arabidopsis thaliana
AT1G08040 5.0kb downstream 5.0kb downstream 8423 true Chr1: 2490342-2498764 Arabidopsis thaliana
AT1G08040 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2490342-2495341 Arabidopsis thaliana
AT1G08040 10.0kb upstream 10.0kb upstream 13423 true Chr1: 2495342-2508764 Arabidopsis thaliana
AT1G08040 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2498765-2508764 Arabidopsis thaliana
AT1G08040 10.0kb downstream 10.0kb downstream 13423 true Chr1: 2485342-2498764 Arabidopsis thaliana
AT1G08040 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2485342-2495341 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367011 5261 Brassicaceae View MSA
123839648 5264 Brassicales-Malvales View MSA
124342800 5266 SBM View MSA
124244125 5268 Malvidae View MSA
124068224 5270 Rosid View MSA
123742371 5271 Pentapetalae View MSA
122797381 5272 Eudicot View MSA
122046740 5273 Angiosperm View MSA
121347735 5274 Embryophyte View MSA
123426523 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.697        
cufflinks 7.596        
cufflinks 3.919       Low
cufflinks 7.31        
cufflinks 3.73       Low
cufflinks 7.353        

0 Strain