Gene : LIG1 A. thaliana TAIR10
Primary Identifier:  ? AT1G08130 Defline:  (1 of 2) K10747 - DNA ligase 1 (LIG1)
Genomic Order:  761 Name:  ? AT1G08130
Secondary Identifier:  ? PAC:19656420
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G08130 0.5kb upstream 0.5kb upstream 5745 true Chr1: 2542702-2548446 Arabidopsis thaliana
AT1G08130 0.5kb upstream 0.5kb upstream 500 false Chr1: 2547947-2548446 Arabidopsis thaliana
AT1G08130 0.5kb downstream 0.5kb downstream 5745 true Chr1: 2542202-2547946 Arabidopsis thaliana
AT1G08130 0.5kb downstream 0.5kb downstream 500 false Chr1: 2542202-2542701 Arabidopsis thaliana
AT1G08130 1.0kb upstream 1.0kb upstream 6245 true Chr1: 2542702-2548946 Arabidopsis thaliana
AT1G08130 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2547947-2548946 Arabidopsis thaliana
AT1G08130 1.0kb downstream 1.0kb downstream 6245 true Chr1: 2541702-2547946 Arabidopsis thaliana
AT1G08130 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2541702-2542701 Arabidopsis thaliana
AT1G08130 2.0kb upstream 2.0kb upstream 7245 true Chr1: 2542702-2549946 Arabidopsis thaliana
AT1G08130 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2547947-2549946 Arabidopsis thaliana
AT1G08130 2.0kb downstream 2.0kb downstream 7245 true Chr1: 2540702-2547946 Arabidopsis thaliana
AT1G08130 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2540702-2542701 Arabidopsis thaliana
AT1G08130 5.0kb upstream 5.0kb upstream 10245 true Chr1: 2542702-2552946 Arabidopsis thaliana
AT1G08130 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2547947-2552946 Arabidopsis thaliana
AT1G08130 5.0kb downstream 5.0kb downstream 10245 true Chr1: 2537702-2547946 Arabidopsis thaliana
AT1G08130 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2537702-2542701 Arabidopsis thaliana
AT1G08130 10.0kb upstream 10.0kb upstream 15245 true Chr1: 2542702-2557946 Arabidopsis thaliana
AT1G08130 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2547947-2557946 Arabidopsis thaliana
AT1G08130 10.0kb downstream 10.0kb downstream 15245 true Chr1: 2532702-2547946 Arabidopsis thaliana
AT1G08130 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2532702-2542701 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377199 5261 Brassicaceae View MSA
123828788 5264 Brassicales-Malvales View MSA
124343600 5266 SBM View MSA
124239190 5268 Malvidae View MSA
124060401 5270 Rosid View MSA
123746296 5271 Pentapetalae View MSA
122793355 5272 Eudicot View MSA
122047557 5273 Angiosperm View MSA
121348285 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.029        
cufflinks 6.253        
cufflinks 4.572       Low
cufflinks 6.607        
cufflinks 4.503       Low
cufflinks 8.029       High

0 Strain