Gene : APX1 A. thaliana TAIR10
Primary Identifier:  ? AT1G07890 Defline:  (1 of 2) PTHR31356:SF10 - L-ASCORBATE PEROXIDASE 2, CYTOSOLIC
Genomic Order:  731 Name:  ? AT1G07890
Secondary Identifier:  ? PAC:19657090
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2261 Arabidopsis thaliana pathologic  
Athaliana PWY-6959 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G07890 0.5kb upstream 0.5kb upstream 2836 true Chr1: 2436830-2439665 Arabidopsis thaliana
AT1G07890 0.5kb upstream 0.5kb upstream 500 false Chr1: 2436830-2437329 Arabidopsis thaliana
AT1G07890 0.5kb downstream 0.5kb downstream 2836 true Chr1: 2437330-2440165 Arabidopsis thaliana
AT1G07890 0.5kb downstream 0.5kb downstream 500 false Chr1: 2439666-2440165 Arabidopsis thaliana
AT1G07890 1.0kb upstream 1.0kb upstream 3336 true Chr1: 2436330-2439665 Arabidopsis thaliana
AT1G07890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2436330-2437329 Arabidopsis thaliana
AT1G07890 1.0kb downstream 1.0kb downstream 3336 true Chr1: 2437330-2440665 Arabidopsis thaliana
AT1G07890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2439666-2440665 Arabidopsis thaliana
AT1G07890 2.0kb upstream 2.0kb upstream 4336 true Chr1: 2435330-2439665 Arabidopsis thaliana
AT1G07890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2435330-2437329 Arabidopsis thaliana
AT1G07890 2.0kb downstream 2.0kb downstream 4336 true Chr1: 2437330-2441665 Arabidopsis thaliana
AT1G07890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2439666-2441665 Arabidopsis thaliana
AT1G07890 5.0kb upstream 5.0kb upstream 7336 true Chr1: 2432330-2439665 Arabidopsis thaliana
AT1G07890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2432330-2437329 Arabidopsis thaliana
AT1G07890 5.0kb downstream 5.0kb downstream 7336 true Chr1: 2437330-2444665 Arabidopsis thaliana
AT1G07890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2439666-2444665 Arabidopsis thaliana
AT1G07890 10.0kb upstream 10.0kb upstream 12336 true Chr1: 2427330-2439665 Arabidopsis thaliana
AT1G07890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2427330-2437329 Arabidopsis thaliana
AT1G07890 10.0kb downstream 10.0kb downstream 12336 true Chr1: 2437330-2449665 Arabidopsis thaliana
AT1G07890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2439666-2449665 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365618 5261 Brassicaceae View MSA
123839523 5264 Brassicales-Malvales View MSA
124339715 5266 SBM View MSA
124248895 5268 Malvidae View MSA
124068994 5270 Rosid View MSA
123741454 5271 Pentapetalae View MSA
122796920 5272 Eudicot View MSA
122044564 5273 Angiosperm View MSA
121344996 5274 Embryophyte View MSA
123426233 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.037     High  
cufflinks 35.689     High  
cufflinks 30.1     High  
cufflinks 39.013     High  
cufflinks 27.467     High Low
cufflinks 45.368     High High

0 Strain