Gene : AT1G07840 A. thaliana TAIR10
Defline:  (1 of 1) K14765 - U3 small nucleolar ribonucleoprotein protein LCP5 (NGDN, LCP5) Genomic Order:  725
Name:  ? AT1G07840 Secondary Identifier:  ? PAC:19651313
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G07840 0.5kb upstream 0.5kb upstream 3123 true Chr1: 2423554-2426676 Arabidopsis thaliana
AT1G07840 0.5kb upstream 0.5kb upstream 500 false Chr1: 2423554-2424053 Arabidopsis thaliana
AT1G07840 0.5kb downstream 0.5kb downstream 3123 true Chr1: 2424054-2427176 Arabidopsis thaliana
AT1G07840 0.5kb downstream 0.5kb downstream 500 false Chr1: 2426677-2427176 Arabidopsis thaliana
AT1G07840 1.0kb upstream 1.0kb upstream 3623 true Chr1: 2423054-2426676 Arabidopsis thaliana
AT1G07840 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2423054-2424053 Arabidopsis thaliana
AT1G07840 1.0kb downstream 1.0kb downstream 3623 true Chr1: 2424054-2427676 Arabidopsis thaliana
AT1G07840 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2426677-2427676 Arabidopsis thaliana
AT1G07840 2.0kb upstream 2.0kb upstream 4623 true Chr1: 2422054-2426676 Arabidopsis thaliana
AT1G07840 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2422054-2424053 Arabidopsis thaliana
AT1G07840 2.0kb downstream 2.0kb downstream 4623 true Chr1: 2424054-2428676 Arabidopsis thaliana
AT1G07840 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2426677-2428676 Arabidopsis thaliana
AT1G07840 5.0kb upstream 5.0kb upstream 7623 true Chr1: 2419054-2426676 Arabidopsis thaliana
AT1G07840 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2419054-2424053 Arabidopsis thaliana
AT1G07840 5.0kb downstream 5.0kb downstream 7623 true Chr1: 2424054-2431676 Arabidopsis thaliana
AT1G07840 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2426677-2431676 Arabidopsis thaliana
AT1G07840 10.0kb upstream 10.0kb upstream 12623 true Chr1: 2414054-2426676 Arabidopsis thaliana
AT1G07840 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2414054-2424053 Arabidopsis thaliana
AT1G07840 10.0kb downstream 10.0kb downstream 12623 true Chr1: 2424054-2436676 Arabidopsis thaliana
AT1G07840 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2426677-2436676 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377524 5261 Brassicaceae View MSA
123827972 5264 Brassicales-Malvales View MSA
124344491 5266 SBM View MSA
124242828 5268 Malvidae View MSA
124066836 5270 Rosid View MSA
123740201 5271 Pentapetalae View MSA
122793793 5272 Eudicot View MSA
122047581 5273 Angiosperm View MSA
121345702 5274 Embryophyte View MSA
123380258 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.451        
cufflinks 3.238        
cufflinks 2.075        
cufflinks 3.211        
cufflinks 1.849       Low
cufflinks 3.45       High

0 Strain