Gene : AT1G20370 A. thaliana TAIR10
Defline:  (1 of 1) 4.2.1.70//5.4.99.12 - Pseudouridylate synthase / Uracil hydrolyase // tRNA pseudouridine(38-40) synthase / tRNA pseudouridylate synthase I Genomic Order:  2049
Name:  ? AT1G20370 Secondary Identifier:  ? PAC:19653917
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6019 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G20370 0.5kb upstream 0.5kb upstream 2565 true Chr1: 7051577-7054141 Arabidopsis thaliana
AT1G20370 0.5kb upstream 0.5kb upstream 500 false Chr1: 7053642-7054141 Arabidopsis thaliana
AT1G20370 0.5kb downstream 0.5kb downstream 2565 true Chr1: 7051077-7053641 Arabidopsis thaliana
AT1G20370 0.5kb downstream 0.5kb downstream 500 false Chr1: 7051077-7051576 Arabidopsis thaliana
AT1G20370 1.0kb upstream 1.0kb upstream 3065 true Chr1: 7051577-7054641 Arabidopsis thaliana
AT1G20370 1.0kb upstream 1.0kb upstream 1000 false Chr1: 7053642-7054641 Arabidopsis thaliana
AT1G20370 1.0kb downstream 1.0kb downstream 3065 true Chr1: 7050577-7053641 Arabidopsis thaliana
AT1G20370 1.0kb downstream 1.0kb downstream 1000 false Chr1: 7050577-7051576 Arabidopsis thaliana
AT1G20370 2.0kb upstream 2.0kb upstream 4065 true Chr1: 7051577-7055641 Arabidopsis thaliana
AT1G20370 2.0kb upstream 2.0kb upstream 2000 false Chr1: 7053642-7055641 Arabidopsis thaliana
AT1G20370 2.0kb downstream 2.0kb downstream 4065 true Chr1: 7049577-7053641 Arabidopsis thaliana
AT1G20370 2.0kb downstream 2.0kb downstream 2000 false Chr1: 7049577-7051576 Arabidopsis thaliana
AT1G20370 5.0kb upstream 5.0kb upstream 7065 true Chr1: 7051577-7058641 Arabidopsis thaliana
AT1G20370 5.0kb upstream 5.0kb upstream 5000 false Chr1: 7053642-7058641 Arabidopsis thaliana
AT1G20370 5.0kb downstream 5.0kb downstream 7065 true Chr1: 7046577-7053641 Arabidopsis thaliana
AT1G20370 5.0kb downstream 5.0kb downstream 5000 false Chr1: 7046577-7051576 Arabidopsis thaliana
AT1G20370 10.0kb upstream 10.0kb upstream 12065 true Chr1: 7051577-7063641 Arabidopsis thaliana
AT1G20370 10.0kb upstream 10.0kb upstream 10000 false Chr1: 7053642-7063641 Arabidopsis thaliana
AT1G20370 10.0kb downstream 10.0kb downstream 12065 true Chr1: 7041577-7053641 Arabidopsis thaliana
AT1G20370 10.0kb downstream 10.0kb downstream 10000 false Chr1: 7041577-7051576 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380792 5261 Brassicaceae View MSA
123838918 5264 Brassicales-Malvales View MSA
124336640 5266 SBM View MSA
124245189 5268 Malvidae View MSA
124062436 5270 Rosid View MSA
123743490 5271 Pentapetalae View MSA
122793573 5272 Eudicot View MSA
122043730 5273 Angiosperm View MSA
121347551 5274 Embryophyte View MSA
123427150 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.508        
cufflinks 9.336        
cufflinks 6.826        
cufflinks 10.146        
cufflinks 6.346       Low
cufflinks 11.162       High

0 Strain