Gene : AT1G07590 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  695
Name:  ? AT1G07590 Secondary Identifier:  ? PAC:19658303
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G07590 0.5kb upstream 0.5kb upstream 3369 true Chr1: 2336523-2339891 Arabidopsis thaliana
AT1G07590 0.5kb upstream 0.5kb upstream 500 false Chr1: 2339392-2339891 Arabidopsis thaliana
AT1G07590 0.5kb downstream 0.5kb downstream 3369 true Chr1: 2336023-2339391 Arabidopsis thaliana
AT1G07590 0.5kb downstream 0.5kb downstream 500 false Chr1: 2336023-2336522 Arabidopsis thaliana
AT1G07590 1.0kb upstream 1.0kb upstream 3869 true Chr1: 2336523-2340391 Arabidopsis thaliana
AT1G07590 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2339392-2340391 Arabidopsis thaliana
AT1G07590 1.0kb downstream 1.0kb downstream 3869 true Chr1: 2335523-2339391 Arabidopsis thaliana
AT1G07590 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2335523-2336522 Arabidopsis thaliana
AT1G07590 2.0kb upstream 2.0kb upstream 4869 true Chr1: 2336523-2341391 Arabidopsis thaliana
AT1G07590 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2339392-2341391 Arabidopsis thaliana
AT1G07590 2.0kb downstream 2.0kb downstream 4869 true Chr1: 2334523-2339391 Arabidopsis thaliana
AT1G07590 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2334523-2336522 Arabidopsis thaliana
AT1G07590 5.0kb upstream 5.0kb upstream 7869 true Chr1: 2336523-2344391 Arabidopsis thaliana
AT1G07590 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2339392-2344391 Arabidopsis thaliana
AT1G07590 5.0kb downstream 5.0kb downstream 7869 true Chr1: 2331523-2339391 Arabidopsis thaliana
AT1G07590 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2331523-2336522 Arabidopsis thaliana
AT1G07590 10.0kb upstream 10.0kb upstream 12869 true Chr1: 2336523-2349391 Arabidopsis thaliana
AT1G07590 10.0kb upstream 10.0kb upstream 10000 false Chr1: 2339392-2349391 Arabidopsis thaliana
AT1G07590 10.0kb downstream 10.0kb downstream 12869 true Chr1: 2326523-2339391 Arabidopsis thaliana
AT1G07590 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2326523-2336522 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360384 5261 Brassicaceae View MSA
123828848 5264 Brassicales-Malvales View MSA
124339354 5266 SBM View MSA
124242791 5268 Malvidae View MSA
124062524 5270 Rosid View MSA
123736942 5271 Pentapetalae View MSA
122790560 5272 Eudicot View MSA
122046804 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.72        
cufflinks 12.07        
cufflinks 6.04       Low
cufflinks 13.964        
cufflinks 7.835        
cufflinks 17.763       High

0 Strain