Gene : AT1G06560 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.202 - Multisite-specific tRNA:(cytosine-C(5))-methyltransferase Genomic Order:  591
Name:  ? AT1G06560 Secondary Identifier:  ? PAC:19652076
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6829 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G06560 0.5kb upstream 0.5kb upstream 4892 true Chr1: 2007115-2012006 Arabidopsis thaliana
AT1G06560 0.5kb upstream 0.5kb upstream 500 false Chr1: 2007115-2007614 Arabidopsis thaliana
AT1G06560 0.5kb downstream 0.5kb downstream 4892 true Chr1: 2007615-2012506 Arabidopsis thaliana
AT1G06560 0.5kb downstream 0.5kb downstream 500 false Chr1: 2012007-2012506 Arabidopsis thaliana
AT1G06560 1.0kb upstream 1.0kb upstream 5392 true Chr1: 2006615-2012006 Arabidopsis thaliana
AT1G06560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 2006615-2007614 Arabidopsis thaliana
AT1G06560 1.0kb downstream 1.0kb downstream 5392 true Chr1: 2007615-2013006 Arabidopsis thaliana
AT1G06560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 2012007-2013006 Arabidopsis thaliana
AT1G06560 2.0kb upstream 2.0kb upstream 6392 true Chr1: 2005615-2012006 Arabidopsis thaliana
AT1G06560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 2005615-2007614 Arabidopsis thaliana
AT1G06560 2.0kb downstream 2.0kb downstream 6392 true Chr1: 2007615-2014006 Arabidopsis thaliana
AT1G06560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 2012007-2014006 Arabidopsis thaliana
AT1G06560 5.0kb upstream 5.0kb upstream 9392 true Chr1: 2002615-2012006 Arabidopsis thaliana
AT1G06560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 2002615-2007614 Arabidopsis thaliana
AT1G06560 5.0kb downstream 5.0kb downstream 9392 true Chr1: 2007615-2017006 Arabidopsis thaliana
AT1G06560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 2012007-2017006 Arabidopsis thaliana
AT1G06560 10.0kb upstream 10.0kb upstream 14392 true Chr1: 1997615-2012006 Arabidopsis thaliana
AT1G06560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1997615-2007614 Arabidopsis thaliana
AT1G06560 10.0kb downstream 10.0kb downstream 14392 true Chr1: 2007615-2022006 Arabidopsis thaliana
AT1G06560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 2012007-2022006 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026330 5273 Angiosperm View MSA
122375083 5261 Brassicaceae View MSA
123839771 5264 Brassicales-Malvales View MSA
124346550 5266 SBM View MSA
124239330 5268 Malvidae View MSA
124064308 5270 Rosid View MSA
123740996 5271 Pentapetalae View MSA
122793735 5272 Eudicot View MSA
121346670 5274 Embryophyte View MSA
123427467 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.835        
cufflinks 5.543        
cufflinks 2.954        
cufflinks 5.549        
cufflinks 2.648       Low
cufflinks 4.972        

0 Strain