Gene : AT1G06200 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12383//PTHR12383:SF5 - PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED // PEPTIDASE-S24/S26 DOMAIN-CONTAINING PROTEIN Genomic Order:  555
Name:  ? AT1G06200 Secondary Identifier:  ? PAC:19657066
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G06200 0.5kb upstream 0.5kb upstream 3100 true Chr1: 1894336-1897435 Arabidopsis thaliana
AT1G06200 0.5kb upstream 0.5kb upstream 500 false Chr1: 1896936-1897435 Arabidopsis thaliana
AT1G06200 0.5kb downstream 0.5kb downstream 3100 true Chr1: 1893836-1896935 Arabidopsis thaliana
AT1G06200 0.5kb downstream 0.5kb downstream 500 false Chr1: 1893836-1894335 Arabidopsis thaliana
AT1G06200 1.0kb upstream 1.0kb upstream 3600 true Chr1: 1894336-1897935 Arabidopsis thaliana
AT1G06200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1896936-1897935 Arabidopsis thaliana
AT1G06200 1.0kb downstream 1.0kb downstream 3600 true Chr1: 1893336-1896935 Arabidopsis thaliana
AT1G06200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1893336-1894335 Arabidopsis thaliana
AT1G06200 2.0kb upstream 2.0kb upstream 4600 true Chr1: 1894336-1898935 Arabidopsis thaliana
AT1G06200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1896936-1898935 Arabidopsis thaliana
AT1G06200 2.0kb downstream 2.0kb downstream 4600 true Chr1: 1892336-1896935 Arabidopsis thaliana
AT1G06200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1892336-1894335 Arabidopsis thaliana
AT1G06200 5.0kb upstream 5.0kb upstream 7600 true Chr1: 1894336-1901935 Arabidopsis thaliana
AT1G06200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1896936-1901935 Arabidopsis thaliana
AT1G06200 5.0kb downstream 5.0kb downstream 7600 true Chr1: 1889336-1896935 Arabidopsis thaliana
AT1G06200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1889336-1894335 Arabidopsis thaliana
AT1G06200 10.0kb upstream 10.0kb upstream 12600 true Chr1: 1894336-1906935 Arabidopsis thaliana
AT1G06200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1896936-1906935 Arabidopsis thaliana
AT1G06200 10.0kb downstream 10.0kb downstream 12600 true Chr1: 1884336-1896935 Arabidopsis thaliana
AT1G06200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1884336-1894335 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364295 5261 Brassicaceae View MSA
123798725 5264 Brassicales-Malvales View MSA
124348021 5266 SBM View MSA
124242659 5268 Malvidae View MSA
124065093 5270 Rosid View MSA
123753378 5271 Pentapetalae View MSA
122790415 5272 Eudicot View MSA
122044247 5273 Angiosperm View MSA
123428894 5275 Viridiplantae View MSA
121345386 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.337       Low
cufflinks 21.162       High
cufflinks 17.873        
cufflinks 19.855        
cufflinks 20.066        
cufflinks 18.745        

0 Strain