Gene : AT1G06060 A. thaliana TAIR10
Defline:  (1 of 5) KOG2659 - LisH motif-containing protein Genomic Order:  537
Name:  ? AT1G06060 Secondary Identifier:  ? PAC:19650689
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G06060 0.5kb upstream 0.5kb upstream 2419 true Chr1: 1832443-1834861 Arabidopsis thaliana
AT1G06060 0.5kb upstream 0.5kb upstream 500 false Chr1: 1832443-1832942 Arabidopsis thaliana
AT1G06060 0.5kb downstream 0.5kb downstream 2419 true Chr1: 1832943-1835361 Arabidopsis thaliana
AT1G06060 0.5kb downstream 0.5kb downstream 500 false Chr1: 1834862-1835361 Arabidopsis thaliana
AT1G06060 1.0kb upstream 1.0kb upstream 2919 true Chr1: 1831943-1834861 Arabidopsis thaliana
AT1G06060 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1831943-1832942 Arabidopsis thaliana
AT1G06060 1.0kb downstream 1.0kb downstream 2919 true Chr1: 1832943-1835861 Arabidopsis thaliana
AT1G06060 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1834862-1835861 Arabidopsis thaliana
AT1G06060 2.0kb upstream 2.0kb upstream 3919 true Chr1: 1830943-1834861 Arabidopsis thaliana
AT1G06060 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1830943-1832942 Arabidopsis thaliana
AT1G06060 2.0kb downstream 2.0kb downstream 3919 true Chr1: 1832943-1836861 Arabidopsis thaliana
AT1G06060 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1834862-1836861 Arabidopsis thaliana
AT1G06060 5.0kb upstream 5.0kb upstream 6919 true Chr1: 1827943-1834861 Arabidopsis thaliana
AT1G06060 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1827943-1832942 Arabidopsis thaliana
AT1G06060 5.0kb downstream 5.0kb downstream 6919 true Chr1: 1832943-1839861 Arabidopsis thaliana
AT1G06060 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1834862-1839861 Arabidopsis thaliana
AT1G06060 10.0kb upstream 10.0kb upstream 11919 true Chr1: 1822943-1834861 Arabidopsis thaliana
AT1G06060 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1822943-1832942 Arabidopsis thaliana
AT1G06060 10.0kb downstream 10.0kb downstream 11919 true Chr1: 1832943-1844861 Arabidopsis thaliana
AT1G06060 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1834862-1844861 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360181 5261 Brassicaceae View MSA
123833357 5264 Brassicales-Malvales View MSA
124343184 5266 SBM View MSA
124237084 5268 Malvidae View MSA
124061222 5270 Rosid View MSA
123749928 5271 Pentapetalae View MSA
122788874 5272 Eudicot View MSA
122047349 5273 Angiosperm View MSA
121347103 5274 Embryophyte View MSA
123424554 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.844       Low
cufflinks 10.995        
cufflinks 9.964        
cufflinks 11.573       High
cufflinks 10.161        
cufflinks 11.77       High

0 Strain