Gene : AT1G05670 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  493
Name:  ? AT1G05670 Secondary Identifier:  ? PAC:19649595
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05670 0.5kb upstream 0.5kb upstream 3939 true Chr1: 1697587-1701525 Arabidopsis thaliana
AT1G05670 0.5kb upstream 0.5kb upstream 500 false Chr1: 1701026-1701525 Arabidopsis thaliana
AT1G05670 0.5kb downstream 0.5kb downstream 3939 true Chr1: 1697087-1701025 Arabidopsis thaliana
AT1G05670 0.5kb downstream 0.5kb downstream 500 false Chr1: 1697087-1697586 Arabidopsis thaliana
AT1G05670 1.0kb upstream 1.0kb upstream 4439 true Chr1: 1697587-1702025 Arabidopsis thaliana
AT1G05670 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1701026-1702025 Arabidopsis thaliana
AT1G05670 1.0kb downstream 1.0kb downstream 4439 true Chr1: 1696587-1701025 Arabidopsis thaliana
AT1G05670 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1696587-1697586 Arabidopsis thaliana
AT1G05670 2.0kb upstream 2.0kb upstream 5439 true Chr1: 1697587-1703025 Arabidopsis thaliana
AT1G05670 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1701026-1703025 Arabidopsis thaliana
AT1G05670 2.0kb downstream 2.0kb downstream 5439 true Chr1: 1695587-1701025 Arabidopsis thaliana
AT1G05670 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1695587-1697586 Arabidopsis thaliana
AT1G05670 5.0kb upstream 5.0kb upstream 8439 true Chr1: 1697587-1706025 Arabidopsis thaliana
AT1G05670 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1701026-1706025 Arabidopsis thaliana
AT1G05670 5.0kb downstream 5.0kb downstream 8439 true Chr1: 1692587-1701025 Arabidopsis thaliana
AT1G05670 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1692587-1697586 Arabidopsis thaliana
AT1G05670 10.0kb upstream 10.0kb upstream 13439 true Chr1: 1697587-1711025 Arabidopsis thaliana
AT1G05670 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1701026-1711025 Arabidopsis thaliana
AT1G05670 10.0kb downstream 10.0kb downstream 13439 true Chr1: 1687587-1701025 Arabidopsis thaliana
AT1G05670 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1687587-1697586 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364012 5261 Brassicaceae View MSA
123829738 5264 Brassicales-Malvales View MSA
124343628 5266 SBM View MSA
124240850 5268 Malvidae View MSA
124065100 5270 Rosid View MSA
123738721 5271 Pentapetalae View MSA
122787826 5272 Eudicot View MSA
122045787 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121310503 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.246        
cufflinks 1.252        
cufflinks 1.227        
cufflinks 1.319        
cufflinks 0.99       Low
cufflinks 1.156        

0 Strain