Gene : AT1G05270 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21530//PTHR21530:SF0 - PHEROMONE SHUTDOWN PROTEIN // TRAB DOMAIN-CONTAINING PROTEIN Genomic Order:  450
Name:  ? AT1G05270 Secondary Identifier:  ? PAC:19652093
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05270 0.5kb upstream 0.5kb upstream 3270 true Chr1: 1531641-1534910 Arabidopsis thaliana
AT1G05270 0.5kb upstream 0.5kb upstream 500 false Chr1: 1534411-1534910 Arabidopsis thaliana
AT1G05270 0.5kb downstream 0.5kb downstream 3270 true Chr1: 1531141-1534410 Arabidopsis thaliana
AT1G05270 0.5kb downstream 0.5kb downstream 500 false Chr1: 1531141-1531640 Arabidopsis thaliana
AT1G05270 1.0kb upstream 1.0kb upstream 3770 true Chr1: 1531641-1535410 Arabidopsis thaliana
AT1G05270 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1534411-1535410 Arabidopsis thaliana
AT1G05270 1.0kb downstream 1.0kb downstream 3770 true Chr1: 1530641-1534410 Arabidopsis thaliana
AT1G05270 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1530641-1531640 Arabidopsis thaliana
AT1G05270 2.0kb upstream 2.0kb upstream 4770 true Chr1: 1531641-1536410 Arabidopsis thaliana
AT1G05270 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1534411-1536410 Arabidopsis thaliana
AT1G05270 2.0kb downstream 2.0kb downstream 4770 true Chr1: 1529641-1534410 Arabidopsis thaliana
AT1G05270 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1529641-1531640 Arabidopsis thaliana
AT1G05270 5.0kb upstream 5.0kb upstream 7770 true Chr1: 1531641-1539410 Arabidopsis thaliana
AT1G05270 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1534411-1539410 Arabidopsis thaliana
AT1G05270 5.0kb downstream 5.0kb downstream 7770 true Chr1: 1526641-1534410 Arabidopsis thaliana
AT1G05270 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1526641-1531640 Arabidopsis thaliana
AT1G05270 10.0kb upstream 10.0kb upstream 12770 true Chr1: 1531641-1544410 Arabidopsis thaliana
AT1G05270 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1534411-1544410 Arabidopsis thaliana
AT1G05270 10.0kb downstream 10.0kb downstream 12770 true Chr1: 1521641-1534410 Arabidopsis thaliana
AT1G05270 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1521641-1531640 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360381 5261 Brassicaceae View MSA
123839445 5264 Brassicales-Malvales View MSA
124336980 5266 SBM View MSA
124243243 5268 Malvidae View MSA
124064711 5270 Rosid View MSA
123739677 5271 Pentapetalae View MSA
122794129 5272 Eudicot View MSA
122042571 5273 Angiosperm View MSA
121350143 5274 Embryophyte View MSA
123427103 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.991        
cufflinks 12.756        
cufflinks 9.962       Low
cufflinks 13.469       High
cufflinks 10.725        
cufflinks 11.945        

0 Strain