Gene : AT1G05080 A. thaliana TAIR10
Defline:  (1 of 44) PTHR32212//PTHR32212:SF112 - FAMILY NOT NAMED // FBD / LEUCINE RICH REPEAT DOMAINS CONTAINING PROTEIN-RELATED Genomic Order:  430
Name:  ? AT1G05080 Secondary Identifier:  ? PAC:19651115
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05080 0.5kb upstream 0.5kb upstream 1989 true Chr1: 1458591-1460579 Arabidopsis thaliana
AT1G05080 0.5kb upstream 0.5kb upstream 500 false Chr1: 1458591-1459090 Arabidopsis thaliana
AT1G05080 0.5kb downstream 0.5kb downstream 1989 true Chr1: 1459091-1461079 Arabidopsis thaliana
AT1G05080 0.5kb downstream 0.5kb downstream 500 false Chr1: 1460580-1461079 Arabidopsis thaliana
AT1G05080 1.0kb upstream 1.0kb upstream 2489 true Chr1: 1458091-1460579 Arabidopsis thaliana
AT1G05080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1458091-1459090 Arabidopsis thaliana
AT1G05080 1.0kb downstream 1.0kb downstream 2489 true Chr1: 1459091-1461579 Arabidopsis thaliana
AT1G05080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1460580-1461579 Arabidopsis thaliana
AT1G05080 2.0kb upstream 2.0kb upstream 3489 true Chr1: 1457091-1460579 Arabidopsis thaliana
AT1G05080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1457091-1459090 Arabidopsis thaliana
AT1G05080 2.0kb downstream 2.0kb downstream 3489 true Chr1: 1459091-1462579 Arabidopsis thaliana
AT1G05080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1460580-1462579 Arabidopsis thaliana
AT1G05080 5.0kb upstream 5.0kb upstream 6489 true Chr1: 1454091-1460579 Arabidopsis thaliana
AT1G05080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1454091-1459090 Arabidopsis thaliana
AT1G05080 5.0kb downstream 5.0kb downstream 6489 true Chr1: 1459091-1465579 Arabidopsis thaliana
AT1G05080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1460580-1465579 Arabidopsis thaliana
AT1G05080 10.0kb upstream 10.0kb upstream 11489 true Chr1: 1449091-1460579 Arabidopsis thaliana
AT1G05080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1449091-1459090 Arabidopsis thaliana
AT1G05080 10.0kb downstream 10.0kb downstream 11489 true Chr1: 1459091-1470579 Arabidopsis thaliana
AT1G05080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1460580-1470579 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378296 5261 Brassicaceae View MSA
123801816 5264 Brassicales-Malvales View MSA
124299074 5266 SBM View MSA
124150576 5268 Malvidae View MSA
123876166 5270 Rosid View MSA
123459877 5271 Pentapetalae View MSA
122797964 5272 Eudicot View MSA
122050940 5273 Angiosperm View MSA
121351679 5274 Embryophyte View MSA
123382274 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain