Gene : AT1G05150 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23083//PTHR23083:SF380 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // SUBFAMILY NOT NAMED Genomic Order:  437
Name:  ? AT1G05150 Secondary Identifier:  ? PAC:19657242
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G05150 0.5kb upstream 0.5kb upstream 3394 true Chr1: 1484067-1487460 Arabidopsis thaliana
AT1G05150 0.5kb upstream 0.5kb upstream 500 false Chr1: 1486961-1487460 Arabidopsis thaliana
AT1G05150 0.5kb downstream 0.5kb downstream 3394 true Chr1: 1483567-1486960 Arabidopsis thaliana
AT1G05150 0.5kb downstream 0.5kb downstream 500 false Chr1: 1483567-1484066 Arabidopsis thaliana
AT1G05150 1.0kb upstream 1.0kb upstream 3894 true Chr1: 1484067-1487960 Arabidopsis thaliana
AT1G05150 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1486961-1487960 Arabidopsis thaliana
AT1G05150 1.0kb downstream 1.0kb downstream 3894 true Chr1: 1483067-1486960 Arabidopsis thaliana
AT1G05150 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1483067-1484066 Arabidopsis thaliana
AT1G05150 2.0kb upstream 2.0kb upstream 4894 true Chr1: 1484067-1488960 Arabidopsis thaliana
AT1G05150 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1486961-1488960 Arabidopsis thaliana
AT1G05150 2.0kb downstream 2.0kb downstream 4894 true Chr1: 1482067-1486960 Arabidopsis thaliana
AT1G05150 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1482067-1484066 Arabidopsis thaliana
AT1G05150 5.0kb upstream 5.0kb upstream 7894 true Chr1: 1484067-1491960 Arabidopsis thaliana
AT1G05150 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1486961-1491960 Arabidopsis thaliana
AT1G05150 5.0kb downstream 5.0kb downstream 7894 true Chr1: 1479067-1486960 Arabidopsis thaliana
AT1G05150 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1479067-1484066 Arabidopsis thaliana
AT1G05150 10.0kb upstream 10.0kb upstream 12894 true Chr1: 1484067-1496960 Arabidopsis thaliana
AT1G05150 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1486961-1496960 Arabidopsis thaliana
AT1G05150 10.0kb downstream 10.0kb downstream 12894 true Chr1: 1474067-1486960 Arabidopsis thaliana
AT1G05150 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1474067-1484066 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376265 5261 Brassicaceae View MSA
123837177 5264 Brassicales-Malvales View MSA
124340827 5266 SBM View MSA
124238713 5268 Malvidae View MSA
124068399 5270 Rosid View MSA
123739608 5271 Pentapetalae View MSA
122792397 5272 Eudicot View MSA
122043324 5273 Angiosperm View MSA
121346107 5274 Embryophyte View MSA
123380332 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.747        
cufflinks 28.955        
cufflinks 12.694       Low
cufflinks 26.278        
cufflinks 11.921       Low
cufflinks 31.801     High High

0 Strain