Gene : AT1G04840 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  403
Name:  ? AT1G04840 Secondary Identifier:  ? PAC:19651367
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04840 0.5kb upstream 0.5kb upstream 2596 true Chr1: 1362867-1365462 Arabidopsis thaliana
AT1G04840 0.5kb upstream 0.5kb upstream 500 false Chr1: 1364963-1365462 Arabidopsis thaliana
AT1G04840 0.5kb downstream 0.5kb downstream 2596 true Chr1: 1362367-1364962 Arabidopsis thaliana
AT1G04840 0.5kb downstream 0.5kb downstream 500 false Chr1: 1362367-1362866 Arabidopsis thaliana
AT1G04840 1.0kb upstream 1.0kb upstream 3096 true Chr1: 1362867-1365962 Arabidopsis thaliana
AT1G04840 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1364963-1365962 Arabidopsis thaliana
AT1G04840 1.0kb downstream 1.0kb downstream 3096 true Chr1: 1361867-1364962 Arabidopsis thaliana
AT1G04840 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1361867-1362866 Arabidopsis thaliana
AT1G04840 2.0kb upstream 2.0kb upstream 4096 true Chr1: 1362867-1366962 Arabidopsis thaliana
AT1G04840 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1364963-1366962 Arabidopsis thaliana
AT1G04840 2.0kb downstream 2.0kb downstream 4096 true Chr1: 1360867-1364962 Arabidopsis thaliana
AT1G04840 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1360867-1362866 Arabidopsis thaliana
AT1G04840 5.0kb upstream 5.0kb upstream 7096 true Chr1: 1362867-1369962 Arabidopsis thaliana
AT1G04840 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1364963-1369962 Arabidopsis thaliana
AT1G04840 5.0kb downstream 5.0kb downstream 7096 true Chr1: 1357867-1364962 Arabidopsis thaliana
AT1G04840 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1357867-1362866 Arabidopsis thaliana
AT1G04840 10.0kb upstream 10.0kb upstream 12096 true Chr1: 1362867-1374962 Arabidopsis thaliana
AT1G04840 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1364963-1374962 Arabidopsis thaliana
AT1G04840 10.0kb downstream 10.0kb downstream 12096 true Chr1: 1352867-1364962 Arabidopsis thaliana
AT1G04840 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1352867-1362866 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364822 5261 Brassicaceae View MSA
123834441 5264 Brassicales-Malvales View MSA
124346040 5266 SBM View MSA
124242384 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.164        
cufflinks 1.159        
cufflinks 0.775        
cufflinks 1.303        
cufflinks 0.57       Low
cufflinks 1.24        

0 Strain