Gene : AT1G04930 A. thaliana TAIR10
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  412
Name:  ? AT1G04930 Secondary Identifier:  ? PAC:19649432
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G04930 0.5kb upstream 0.5kb upstream 3263 true Chr1: 1396291-1399553 Arabidopsis thaliana
AT1G04930 0.5kb upstream 0.5kb upstream 500 false Chr1: 1399054-1399553 Arabidopsis thaliana
AT1G04930 0.5kb downstream 0.5kb downstream 3263 true Chr1: 1395791-1399053 Arabidopsis thaliana
AT1G04930 0.5kb downstream 0.5kb downstream 500 false Chr1: 1395791-1396290 Arabidopsis thaliana
AT1G04930 1.0kb upstream 1.0kb upstream 3763 true Chr1: 1396291-1400053 Arabidopsis thaliana
AT1G04930 1.0kb upstream 1.0kb upstream 1000 false Chr1: 1399054-1400053 Arabidopsis thaliana
AT1G04930 1.0kb downstream 1.0kb downstream 3763 true Chr1: 1395291-1399053 Arabidopsis thaliana
AT1G04930 1.0kb downstream 1.0kb downstream 1000 false Chr1: 1395291-1396290 Arabidopsis thaliana
AT1G04930 2.0kb upstream 2.0kb upstream 4763 true Chr1: 1396291-1401053 Arabidopsis thaliana
AT1G04930 2.0kb upstream 2.0kb upstream 2000 false Chr1: 1399054-1401053 Arabidopsis thaliana
AT1G04930 2.0kb downstream 2.0kb downstream 4763 true Chr1: 1394291-1399053 Arabidopsis thaliana
AT1G04930 2.0kb downstream 2.0kb downstream 2000 false Chr1: 1394291-1396290 Arabidopsis thaliana
AT1G04930 5.0kb upstream 5.0kb upstream 7763 true Chr1: 1396291-1404053 Arabidopsis thaliana
AT1G04930 5.0kb upstream 5.0kb upstream 5000 false Chr1: 1399054-1404053 Arabidopsis thaliana
AT1G04930 5.0kb downstream 5.0kb downstream 7763 true Chr1: 1391291-1399053 Arabidopsis thaliana
AT1G04930 5.0kb downstream 5.0kb downstream 5000 false Chr1: 1391291-1396290 Arabidopsis thaliana
AT1G04930 10.0kb upstream 10.0kb upstream 12763 true Chr1: 1396291-1409053 Arabidopsis thaliana
AT1G04930 10.0kb upstream 10.0kb upstream 10000 false Chr1: 1399054-1409053 Arabidopsis thaliana
AT1G04930 10.0kb downstream 10.0kb downstream 12763 true Chr1: 1386291-1399053 Arabidopsis thaliana
AT1G04930 10.0kb downstream 10.0kb downstream 10000 false Chr1: 1386291-1396290 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362124 5261 Brassicaceae View MSA
123798313 5264 Brassicales-Malvales View MSA
124295969 5266 SBM View MSA
124250614 5268 Malvidae View MSA
124065426 5270 Rosid View MSA
123746195 5271 Pentapetalae View MSA
122787235 5272 Eudicot View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.397        
cufflinks 0.632        
cufflinks 0.318       Low
cufflinks 0.704       High
cufflinks 0.336        
cufflinks 0.691        

0 Strain