Gene : AT1G33340 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22951//PTHR22951:SF14 - CLATHRIN ASSEMBLY PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3295
Name:  ? AT1G33340 Secondary Identifier:  ? PAC:19652277
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G33340 0.5kb upstream 0.5kb upstream 1879 true Chr1: 12087080-12088958 Arabidopsis thaliana
AT1G33340 0.5kb upstream 0.5kb upstream 500 false Chr1: 12087080-12087579 Arabidopsis thaliana
AT1G33340 0.5kb downstream 0.5kb downstream 1879 true Chr1: 12087580-12089458 Arabidopsis thaliana
AT1G33340 0.5kb downstream 0.5kb downstream 500 false Chr1: 12088959-12089458 Arabidopsis thaliana
AT1G33340 1.0kb upstream 1.0kb upstream 2379 true Chr1: 12086580-12088958 Arabidopsis thaliana
AT1G33340 1.0kb upstream 1.0kb upstream 1000 false Chr1: 12086580-12087579 Arabidopsis thaliana
AT1G33340 1.0kb downstream 1.0kb downstream 2379 true Chr1: 12087580-12089958 Arabidopsis thaliana
AT1G33340 1.0kb downstream 1.0kb downstream 1000 false Chr1: 12088959-12089958 Arabidopsis thaliana
AT1G33340 2.0kb upstream 2.0kb upstream 3379 true Chr1: 12085580-12088958 Arabidopsis thaliana
AT1G33340 2.0kb upstream 2.0kb upstream 2000 false Chr1: 12085580-12087579 Arabidopsis thaliana
AT1G33340 2.0kb downstream 2.0kb downstream 3379 true Chr1: 12087580-12090958 Arabidopsis thaliana
AT1G33340 2.0kb downstream 2.0kb downstream 2000 false Chr1: 12088959-12090958 Arabidopsis thaliana
AT1G33340 5.0kb upstream 5.0kb upstream 6379 true Chr1: 12082580-12088958 Arabidopsis thaliana
AT1G33340 5.0kb upstream 5.0kb upstream 5000 false Chr1: 12082580-12087579 Arabidopsis thaliana
AT1G33340 5.0kb downstream 5.0kb downstream 6379 true Chr1: 12087580-12093958 Arabidopsis thaliana
AT1G33340 5.0kb downstream 5.0kb downstream 5000 false Chr1: 12088959-12093958 Arabidopsis thaliana
AT1G33340 10.0kb upstream 10.0kb upstream 11379 true Chr1: 12077580-12088958 Arabidopsis thaliana
AT1G33340 10.0kb upstream 10.0kb upstream 10000 false Chr1: 12077580-12087579 Arabidopsis thaliana
AT1G33340 10.0kb downstream 10.0kb downstream 11379 true Chr1: 12087580-12098958 Arabidopsis thaliana
AT1G33340 10.0kb downstream 10.0kb downstream 10000 false Chr1: 12088959-12098958 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369933 5261 Brassicaceae View MSA
123828797 5264 Brassicales-Malvales View MSA
124338910 5266 SBM View MSA
124242075 5268 Malvidae View MSA
124062838 5270 Rosid View MSA
123748720 5271 Pentapetalae View MSA
122791986 5272 Eudicot View MSA
122050883 5273 Angiosperm View MSA
121351758 5274 Embryophyte View MSA
123382309 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.173       Low
cufflinks 7.462       High
cufflinks 2.827        
cufflinks 5.356        
cufflinks 1.075       Low
cufflinks 4.746        

0 Strain