Gene : AT1G31790 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24015//PTHR24015:SF562 - FAMILY NOT NAMED // PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Genomic Order:  3145
Name:  ? AT1G31790 Secondary Identifier:  ? PAC:19653038
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G31790 0.5kb upstream 0.5kb upstream 1829 true Chr1: 11394690-11396518 Arabidopsis thaliana
AT1G31790 0.5kb upstream 0.5kb upstream 500 false Chr1: 11396019-11396518 Arabidopsis thaliana
AT1G31790 0.5kb downstream 0.5kb downstream 1829 true Chr1: 11394190-11396018 Arabidopsis thaliana
AT1G31790 0.5kb downstream 0.5kb downstream 500 false Chr1: 11394190-11394689 Arabidopsis thaliana
AT1G31790 1.0kb upstream 1.0kb upstream 2329 true Chr1: 11394690-11397018 Arabidopsis thaliana
AT1G31790 1.0kb upstream 1.0kb upstream 1000 false Chr1: 11396019-11397018 Arabidopsis thaliana
AT1G31790 1.0kb downstream 1.0kb downstream 2329 true Chr1: 11393690-11396018 Arabidopsis thaliana
AT1G31790 1.0kb downstream 1.0kb downstream 1000 false Chr1: 11393690-11394689 Arabidopsis thaliana
AT1G31790 2.0kb upstream 2.0kb upstream 3329 true Chr1: 11394690-11398018 Arabidopsis thaliana
AT1G31790 2.0kb upstream 2.0kb upstream 2000 false Chr1: 11396019-11398018 Arabidopsis thaliana
AT1G31790 2.0kb downstream 2.0kb downstream 3329 true Chr1: 11392690-11396018 Arabidopsis thaliana
AT1G31790 2.0kb downstream 2.0kb downstream 2000 false Chr1: 11392690-11394689 Arabidopsis thaliana
AT1G31790 5.0kb upstream 5.0kb upstream 6329 true Chr1: 11394690-11401018 Arabidopsis thaliana
AT1G31790 5.0kb upstream 5.0kb upstream 5000 false Chr1: 11396019-11401018 Arabidopsis thaliana
AT1G31790 5.0kb downstream 5.0kb downstream 6329 true Chr1: 11389690-11396018 Arabidopsis thaliana
AT1G31790 5.0kb downstream 5.0kb downstream 5000 false Chr1: 11389690-11394689 Arabidopsis thaliana
AT1G31790 10.0kb upstream 10.0kb upstream 11329 true Chr1: 11394690-11406018 Arabidopsis thaliana
AT1G31790 10.0kb upstream 10.0kb upstream 10000 false Chr1: 11396019-11406018 Arabidopsis thaliana
AT1G31790 10.0kb downstream 10.0kb downstream 11329 true Chr1: 11384690-11396018 Arabidopsis thaliana
AT1G31790 10.0kb downstream 10.0kb downstream 10000 false Chr1: 11384690-11394689 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365193 5261 Brassicaceae View MSA
123831657 5264 Brassicales-Malvales View MSA
124346189 5266 SBM View MSA
124243885 5268 Malvidae View MSA
124050221 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.627       High
cufflinks 1.982        
cufflinks 2.454        
cufflinks 2.55        
cufflinks 2.234        
cufflinks 1.653       Low

0 Strain